miRNA display CGI


Results 1 - 20 of 106 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28324 3' -57.2 NC_005905.1 + 17197 0.66 0.669277
Target:  5'- uUGGCUUGGgCCAAGCUaGCUUcaACa -3'
miRNA:   3'- gAUCGAACCgGGUUCGGcCGAAccUG- -5'
28324 3' -57.2 NC_005905.1 + 21953 0.76 0.192965
Target:  5'- uUAGCUUcgacgaguuuuaccGaGUCUAGGCCGGCUUGGGCc -3'
miRNA:   3'- gAUCGAA--------------C-CGGGUUCGGCCGAACCUG- -5'
28324 3' -57.2 NC_005905.1 + 17719 0.77 0.161677
Target:  5'- -aGGUUUaucGaGUCCAGGCCGGCUUGGGCc -3'
miRNA:   3'- gaUCGAA---C-CGGGUUCGGCCGAACCUG- -5'
28324 3' -57.2 NC_005905.1 + 8839 1.05 0.001813
Target:  5'- gCUAGCUUGGCCCAAGCCGGUUUGGACu -3'
miRNA:   3'- -GAUCGAACCGGGUUCGGCCGAACCUG- -5'
28324 3' -57.2 NC_005905.1 + 19650 0.71 0.401922
Target:  5'- gCUAGCUUcgacaaauuuuaucGaGUCCAGaCCGGCUUGGGCc -3'
miRNA:   3'- -GAUCGAA--------------C-CGGGUUcGGCCGAACCUG- -5'
28324 3' -57.2 NC_005905.1 + 19870 0.71 0.401922
Target:  5'- gCUAGCUUcgacaaauuuuaucGaGUCCAGaCCGGCUUGGGCc -3'
miRNA:   3'- -GAUCGAA--------------C-CGGGUUcGGCCGAACCUG- -5'
28324 3' -57.2 NC_005905.1 + 9015 0.71 0.378194
Target:  5'- -aAGCUaacucuGCCCAAGCCGGgcUGGACu -3'
miRNA:   3'- gaUCGAac----CGGGUUCGGCCgaACCUG- -5'
28324 3' -57.2 NC_005905.1 + 17841 0.72 0.367111
Target:  5'- uUAGCUUcgacaaauuuuaucGaGUUUAGGCCGGCUUGGGCc -3'
miRNA:   3'- gAUCGAA--------------C-CGGGUUCGGCCGAACCUG- -5'
28324 3' -57.2 NC_005905.1 + 17307 0.73 0.306142
Target:  5'- uUGGCUUGGgCCAAGCUaGCUUcGACa -3'
miRNA:   3'- gAUCGAACCgGGUUCGGcCGAAcCUG- -5'
28324 3' -57.2 NC_005905.1 + 21908 0.76 0.192965
Target:  5'- uUAGCUUcgacgaguuuuaccGaGUCUAGGCCGGCUUGGGCc -3'
miRNA:   3'- gAUCGAA--------------C-CGGGUUCGGCCGAACCUG- -5'
28324 3' -57.2 NC_005905.1 + 17527 0.73 0.306142
Target:  5'- uUGGCUUGGgCCAAGCUaGCUUcGACa -3'
miRNA:   3'- gAUCGAACCgGGUUCGGcCGAAcCUG- -5'
28324 3' -57.2 NC_005905.1 + 20077 0.73 0.3212
Target:  5'- -aGGUUUaucGaGUCCAGGUCGGCUUGGGCc -3'
miRNA:   3'- gaUCGAA---C-CGGGUUCGGCCGAACCUG- -5'
28324 3' -57.2 NC_005905.1 + 17241 0.66 0.669277
Target:  5'- -cGGCUUGGgCCGAGUUaGCUUcGACa -3'
miRNA:   3'- gaUCGAACCgGGUUCGGcCGAAcCUG- -5'
28324 3' -57.2 NC_005905.1 + 22181 0.73 0.284579
Target:  5'- -------aGCCCAGGCCGGCUUGGGu -3'
miRNA:   3'- gaucgaacCGGGUUCGGCCGAACCUg -5'
28324 3' -57.2 NC_005905.1 + 20202 0.67 0.637171
Target:  5'- -cAGCguaucGaGUCCAGaCCGGCUUGGGCc -3'
miRNA:   3'- gaUCGaa---C-CGGGUUcGGCCGAACCUG- -5'
28324 3' -57.2 NC_005905.1 + 22133 0.72 0.3505
Target:  5'- uUAGCUUcgacaaauuuuaucGaGUCUAGGCCGGUUUGGGCc -3'
miRNA:   3'- gAUCGAA--------------C-CGGGUUCGGCCGAACCUG- -5'
28324 3' -57.2 NC_005905.1 + 19760 0.75 0.219661
Target:  5'- gCUAGCcUcgacaaauuuuaucGaGUCCAGGCCGGCUUGGGCc -3'
miRNA:   3'- -GAUCGaA--------------C-CGGGUUCGGCCGAACCUG- -5'
28324 3' -57.2 NC_005905.1 + 21998 0.76 0.192965
Target:  5'- uUAGCUUcgacgaguuuuaccGaGUCUAGGCCGGCUUGGGCc -3'
miRNA:   3'- gAUCGAA--------------C-CGGGUUCGGCCGAACCUG- -5'
28324 3' -57.2 NC_005905.1 + 22289 0.67 0.615729
Target:  5'- -cGGCUUGGCCCAAcaUGGUUUG-ACu -3'
miRNA:   3'- gaUCGAACCGGGUUcgGCCGAACcUG- -5'
28324 3' -57.2 NC_005905.1 + 20013 0.71 0.386872
Target:  5'- -cGGCUUGGgCCAAGCUaGCUUcGACa -3'
miRNA:   3'- gaUCGAACCgGGUUCGGcCGAAcCUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.