miRNA display CGI


Results 1 - 20 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28324 3' -57.2 NC_005905.1 + 8595 0.8 0.103857
Target:  5'- uUAGCUUcgacaaauuuuaccGuGUCCAGGCCGGCUUGGGCc -3'
miRNA:   3'- gAUCGAA--------------C-CGGGUUCGGCCGAACCUG- -5'
28324 3' -57.2 NC_005905.1 + 8672 0.66 0.701084
Target:  5'- -aGGUUUaucGaGUCCAGcCCGGCUUGGGCc -3'
miRNA:   3'- gaUCGAA---C-CGGGUUcGGCCGAACCUG- -5'
28324 3' -57.2 NC_005905.1 + 8704 0.71 0.375617
Target:  5'- gCUAGCUUcgacaaauuuuaccGaGUCCAAaCCGGCUUGGGCc -3'
miRNA:   3'- -GAUCGAA--------------C-CGGGUUcGGCCGAACCUG- -5'
28324 3' -57.2 NC_005905.1 + 8729 1.03 0.002571
Target:  5'- gCUAGCUUGGCCCAAGCCGGCcUGGACa -3'
miRNA:   3'- -GAUCGAACCGGGUUCGGCCGaACCUG- -5'
28324 3' -57.2 NC_005905.1 + 8781 0.77 0.161677
Target:  5'- -aGGUUUaucGaGUCCAGGCCGGCUUGGGCc -3'
miRNA:   3'- gaUCGAA---C-CGGGUUCGGCCGAACCUG- -5'
28324 3' -57.2 NC_005905.1 + 8794 0.94 0.010378
Target:  5'- gCUAGCUUGGCCCAAGCCGGgcUGGACu -3'
miRNA:   3'- -GAUCGAACCGGGUUCGGCCgaACCUG- -5'
28324 3' -57.2 NC_005905.1 + 8813 0.82 0.072319
Target:  5'- gCUAGCUUcgacaaauuuuaccGaGUCCAGGCCGGCUUGGGCc -3'
miRNA:   3'- -GAUCGAA--------------C-CGGGUUCGGCCGAACCUG- -5'
28324 3' -57.2 NC_005905.1 + 8839 1.05 0.001813
Target:  5'- gCUAGCUUGGCCCAAGCCGGUUUGGACu -3'
miRNA:   3'- -GAUCGAACCGGGUUCGGCCGAACCUG- -5'
28324 3' -57.2 NC_005905.1 + 8891 0.67 0.605024
Target:  5'- -aGGUUUaucGaGUCCAGcCCGGCUUGGGCa -3'
miRNA:   3'- gaUCGAA---C-CGGGUUcGGCCGAACCUG- -5'
28324 3' -57.2 NC_005905.1 + 8903 1.02 0.002974
Target:  5'- gCUAGCUUGGCCCAAGCCGGCcUGGACu -3'
miRNA:   3'- -GAUCGAACCGGGUUCGGCCGaACCUG- -5'
28324 3' -57.2 NC_005905.1 + 8924 0.7 0.457886
Target:  5'- uUAGCUUcgacaaauuuuaccGaGUCCAGGCCGGCUUGaGCc -3'
miRNA:   3'- gAUCGAA--------------C-CGGGUUCGGCCGAACcUG- -5'
28324 3' -57.2 NC_005905.1 + 8948 1.02 0.002974
Target:  5'- gCUAGCUUGGCCCAAGCCGGCcUGGACu -3'
miRNA:   3'- -GAUCGAACCGGGUUCGGCCGaACCUG- -5'
28324 3' -57.2 NC_005905.1 + 9000 0.77 0.161677
Target:  5'- -aGGUUUaucGaGUCCAGGCCGGCUUGGGCc -3'
miRNA:   3'- gaUCGAA---C-CGGGUUCGGCCGAACCUG- -5'
28324 3' -57.2 NC_005905.1 + 9015 0.71 0.378194
Target:  5'- -aAGCUaacucuGCCCAAGCCGGgcUGGACu -3'
miRNA:   3'- gaUCGAac----CGGGUUCGGCCgaACCUG- -5'
28324 3' -57.2 NC_005905.1 + 9032 0.78 0.152035
Target:  5'- gCUAGCUUcgacaaauuuuaccGaGUCCAGGUCGGCUUGGGCc -3'
miRNA:   3'- -GAUCGAA--------------C-CGGGUUCGGCCGAACCUG- -5'
28324 3' -57.2 NC_005905.1 + 9058 0.97 0.007116
Target:  5'- gCUAGCUUGGCUCAAGCCGGCcUGGACu -3'
miRNA:   3'- -GAUCGAACCGGGUUCGGCCGaACCUG- -5'
28324 3' -57.2 NC_005905.1 + 9123 1.02 0.002974
Target:  5'- gCUAGCUUGGCCCAAGCCGGCcUGGACu -3'
miRNA:   3'- -GAUCGAACCGGGUUCGGCCGaACCUG- -5'
28324 3' -57.2 NC_005905.1 + 9168 0.9 0.022659
Target:  5'- gCUAGCUUGGCCCAAGCCGaCcUGGACu -3'
miRNA:   3'- -GAUCGAACCGGGUUCGGCcGaACCUG- -5'
28324 3' -57.2 NC_005905.1 + 11088 0.7 0.460794
Target:  5'- -gAGUUUGccgaGUCCAGaCCGGCUUGGGCc -3'
miRNA:   3'- gaUCGAAC----CGGGUUcGGCCGAACCUG- -5'
28324 3' -57.2 NC_005905.1 + 11153 0.7 0.460794
Target:  5'- -gAGUUUGccgaGUCCAGaCCGGCUUGGGCc -3'
miRNA:   3'- gaUCGAAC----CGGGUUcGGCCGAACCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.