miRNA display CGI


Results 1 - 20 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28324 3' -57.2 NC_005905.1 + 49246 0.66 0.679926
Target:  5'- -aGGCUcggucGGCUCAAGCCGGUcuaGACu -3'
miRNA:   3'- gaUCGAa----CCGGGUUCGGCCGaacCUG- -5'
28324 3' -57.2 NC_005905.1 + 49156 0.7 0.432172
Target:  5'- -aGGCUcgguUGGCUCAAGCCGGUcuaGACu -3'
miRNA:   3'- gaUCGA----ACCGGGUUCGGCCGaacCUG- -5'
28324 3' -57.2 NC_005905.1 + 49111 0.7 0.432172
Target:  5'- -aGGCUcgguUGGCUCAAGCCGGUcuaGACu -3'
miRNA:   3'- gaUCGA----ACCGGGUUCGGCCGaacCUG- -5'
28324 3' -57.2 NC_005905.1 + 49021 0.7 0.432172
Target:  5'- -aGGCUcgguUGGCUCAAGCCGGUcuaGACu -3'
miRNA:   3'- gaUCGA----ACCGGGUUCGGCCGaacCUG- -5'
28324 3' -57.2 NC_005905.1 + 48976 0.7 0.432172
Target:  5'- -aGGCUcgguUGGCUCAAGCCGGUcuaGACu -3'
miRNA:   3'- gaUCGA----ACCGGGUUCGGCCGaacCUG- -5'
28324 3' -57.2 NC_005905.1 + 22289 0.67 0.615729
Target:  5'- -cGGCUUGGCCCAAcaUGGUUUG-ACu -3'
miRNA:   3'- gaUCGAACCGGGUUcgGCCGAACcUG- -5'
28324 3' -57.2 NC_005905.1 + 22181 0.73 0.284579
Target:  5'- -------aGCCCAGGCCGGCUUGGGu -3'
miRNA:   3'- gaucgaacCGGGUUCGGCCGAACCUg -5'
28324 3' -57.2 NC_005905.1 + 22133 0.72 0.3505
Target:  5'- uUAGCUUcgacaaauuuuaucGaGUCUAGGCCGGUUUGGGCc -3'
miRNA:   3'- gAUCGAA--------------C-CGGGUUCGGCCGAACCUG- -5'
28324 3' -57.2 NC_005905.1 + 22056 0.68 0.556191
Target:  5'- -aAGCa-GGCCucgacucauucgaccCAAGCCGGCcUGGGCu -3'
miRNA:   3'- gaUCGaaCCGG---------------GUUCGGCCGaACCUG- -5'
28324 3' -57.2 NC_005905.1 + 21998 0.68 0.583689
Target:  5'- gCUAaCUUGGCCCAAaCCGGCcuaGACu -3'
miRNA:   3'- -GAUcGAACCGGGUUcGGCCGaacCUG- -5'
28324 3' -57.2 NC_005905.1 + 21998 0.76 0.192965
Target:  5'- uUAGCUUcgacgaguuuuaccGaGUCUAGGCCGGCUUGGGCc -3'
miRNA:   3'- gAUCGAA--------------C-CGGGUUCGGCCGAACCUG- -5'
28324 3' -57.2 NC_005905.1 + 21953 0.76 0.192965
Target:  5'- uUAGCUUcgacgaguuuuaccGaGUCUAGGCCGGCUUGGGCc -3'
miRNA:   3'- gAUCGAA--------------C-CGGGUUCGGCCGAACCUG- -5'
28324 3' -57.2 NC_005905.1 + 21952 0.69 0.510599
Target:  5'- -aAGCUacuUGGCUCAAGCCGGCc----- -3'
miRNA:   3'- gaUCGA---ACCGGGUUCGGCCGaaccug -5'
28324 3' -57.2 NC_005905.1 + 21908 0.76 0.192965
Target:  5'- uUAGCUUcgacgaguuuuaccGaGUCUAGGCCGGCUUGGGCc -3'
miRNA:   3'- gAUCGAA--------------C-CGGGUUCGGCCGAACCUG- -5'
28324 3' -57.2 NC_005905.1 + 21864 0.79 0.120124
Target:  5'- gCUAaCUUGGCCCAAGCCGGCcuaGACu -3'
miRNA:   3'- -GAUcGAACCGGGUUCGGCCGaacCUG- -5'
28324 3' -57.2 NC_005905.1 + 21819 0.79 0.120124
Target:  5'- gCUAaCUUGGCCCAAGCCGGCcuaGACu -3'
miRNA:   3'- -GAUcGAACCGGGUUCGGCCGaacCUG- -5'
28324 3' -57.2 NC_005905.1 + 21774 0.79 0.120124
Target:  5'- gCUAaCUUGGCCCAAGCCGGCcuaGACu -3'
miRNA:   3'- -GAUcGAACCGGGUUCGGCCGaacCUG- -5'
28324 3' -57.2 NC_005905.1 + 21729 0.7 0.470556
Target:  5'- gCUAaCUUGGUUCAAGCCGGCcuaGACu -3'
miRNA:   3'- -GAUcGAACCGGGUUCGGCCGaacCUG- -5'
28324 3' -57.2 NC_005905.1 + 20202 0.67 0.637171
Target:  5'- -cAGCguaucGaGUCCAGaCCGGCUUGGGCc -3'
miRNA:   3'- gaUCGaa---C-CGGGUUcGGCCGAACCUG- -5'
28324 3' -57.2 NC_005905.1 + 20142 0.77 0.161677
Target:  5'- -aGGUUUaucGaGUCCAGGCCGGCUUGGGCc -3'
miRNA:   3'- gaUCGAA---C-CGGGUUCGGCCGAACCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.