miRNA display CGI


Results 41 - 60 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28324 5' -53.9 NC_005905.1 + 21767 0.96 0.014591
Target:  5'- -cGUCGAAGCUAaCUUGGCCCAAGCCg -3'
miRNA:   3'- aaCAGCUUCGAUcGAACCGGGUUCGG- -5'
28324 5' -53.9 NC_005905.1 + 21812 0.96 0.014591
Target:  5'- -cGUCGAAGCUAaCUUGGCCCAAGCCg -3'
miRNA:   3'- aaCAGCUUCGAUcGAACCGGGUUCGG- -5'
28324 5' -53.9 NC_005905.1 + 21857 0.96 0.014591
Target:  5'- -cGUCGAAGCUAaCUUGGCCCAAGCCg -3'
miRNA:   3'- aaCAGCUUCGAUcGAACCGGGUUCGG- -5'
28324 5' -53.9 NC_005905.1 + 21945 0.92 0.028827
Target:  5'- uUUGUCGAAGCUA-CUUGGCUCAAGCCg -3'
miRNA:   3'- -AACAGCUUCGAUcGAACCGGGUUCGG- -5'
28324 5' -53.9 NC_005905.1 + 17128 0.91 0.034397
Target:  5'- uUUGUCGAAGCUAaCUcGGCCCAAGCCg -3'
miRNA:   3'- -AACAGCUUCGAUcGAaCCGGGUUCGG- -5'
28324 5' -53.9 NC_005905.1 + 17808 0.88 0.051822
Target:  5'- uUUGUCaGAGCUAGCUUGGCCCAAaCCg -3'
miRNA:   3'- -AACAGcUUCGAUCGAACCGGGUUcGG- -5'
28324 5' -53.9 NC_005905.1 + 21720 0.88 0.053353
Target:  5'- cUUGUCGAAGCUAaCUUGGUUCAAGCCg -3'
miRNA:   3'- -AACAGCUUCGAUcGAACCGGGUUCGG- -5'
28324 5' -53.9 NC_005905.1 + 21991 0.87 0.063505
Target:  5'- -cGUCGAAGCUAaCUUGGCCCAaaccGGCCu -3'
miRNA:   3'- aaCAGCUUCGAUcGAACCGGGU----UCGG- -5'
28324 5' -53.9 NC_005905.1 + 19399 0.85 0.077712
Target:  5'- --aUCcAGGCUAGCUUGGUCCAAGCCg -3'
miRNA:   3'- aacAGcUUCGAUCGAACCGGGUUCGG- -5'
28324 5' -53.9 NC_005905.1 + 21677 0.84 0.097671
Target:  5'- -cGUCGAAGCUAaCUUGGCCaAAGCCg -3'
miRNA:   3'- aaCAGCUUCGAUcGAACCGGgUUCGG- -5'
28324 5' -53.9 NC_005905.1 + 22034 0.84 0.097671
Target:  5'- uUUGUCGAAGCUAaCUUGGCCaaagCAGGCCu -3'
miRNA:   3'- -AACAGCUUCGAUcGAACCGG----GUUCGG- -5'
28324 5' -53.9 NC_005905.1 + 9022 0.83 0.115724
Target:  5'- uUUGUCGAAGCUAaCUcuGCCCAAGCCg -3'
miRNA:   3'- -AACAGCUUCGAUcGAacCGGGUUCGG- -5'
28324 5' -53.9 NC_005905.1 + 8693 0.82 0.136854
Target:  5'- uUUGUCGAAGCUAaaUcGGUCCAAGCCg -3'
miRNA:   3'- -AACAGCUUCGAUcgAaCCGGGUUCGG- -5'
28324 5' -53.9 NC_005905.1 + 48972 0.79 0.200477
Target:  5'- --aUCGAGGCUcGgUUGGCUCAAGCCg -3'
miRNA:   3'- aacAGCUUCGAuCgAACCGGGUUCGG- -5'
28324 5' -53.9 NC_005905.1 + 49017 0.79 0.200477
Target:  5'- --aUCGAGGCUcGgUUGGCUCAAGCCg -3'
miRNA:   3'- aacAGCUUCGAuCgAACCGGGUUCGG- -5'
28324 5' -53.9 NC_005905.1 + 49107 0.79 0.200477
Target:  5'- --aUCGAGGCUcGgUUGGCUCAAGCCg -3'
miRNA:   3'- aacAGCUUCGAuCgAACCGGGUUCGG- -5'
28324 5' -53.9 NC_005905.1 + 49152 0.79 0.200477
Target:  5'- --aUCGAGGCUcGgUUGGCUCAAGCCg -3'
miRNA:   3'- aacAGCUUCGAuCgAACCGGGUUCGG- -5'
28324 5' -53.9 NC_005905.1 + 17743 0.78 0.24742
Target:  5'- uUUGUCGAAGCUAaCUcGGCaCAAGCCg -3'
miRNA:   3'- -AACAGCUUCGAUcGAaCCGgGUUCGG- -5'
28324 5' -53.9 NC_005905.1 + 8616 0.77 0.267244
Target:  5'- gUGUCcAGGCcGGCUUGGgCCAAGCUa -3'
miRNA:   3'- aACAGcUUCGaUCGAACCgGGUUCGG- -5'
28324 5' -53.9 NC_005905.1 + 17433 0.76 0.310707
Target:  5'- uUUGaUCGAgaccaGGUUGGCUUGGgCCAAGCUa -3'
miRNA:   3'- -AAC-AGCU-----UCGAUCGAACCgGGUUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.