Results 41 - 60 of 107 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28324 | 5' | -53.9 | NC_005905.1 | + | 17458 | 0.75 | 0.334378 |
Target: 5'- uUUGUCaAAGCUAaCUcGGCCUAAGCCg -3' miRNA: 3'- -AACAGcUUCGAUcGAaCCGGGUUCGG- -5' |
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28324 | 5' | -53.9 | NC_005905.1 | + | 17348 | 0.75 | 0.334378 |
Target: 5'- uUUGUCaAAGCUAaCUcGGCCUAAGCCg -3' miRNA: 3'- -AACAGcUUCGAUcGAaCCGGGUUCGG- -5' |
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28324 | 5' | -53.9 | NC_005905.1 | + | 19583 | 0.75 | 0.334378 |
Target: 5'- -aGUCcAAGCcGGCUUGGgCCAAGCUa -3' miRNA: 3'- aaCAGcUUCGaUCGAACCgGGUUCGG- -5' |
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28324 | 5' | -53.9 | NC_005905.1 | + | 17238 | 0.75 | 0.334378 |
Target: 5'- uUUGUCaAAGCUAaCUcGGCCUAAGCCg -3' miRNA: 3'- -AACAGcUUCGAUcGAaCCGGGUUCGG- -5' |
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28324 | 5' | -53.9 | NC_005905.1 | + | 17323 | 0.76 | 0.310707 |
Target: 5'- uUUGaUCGAgaccaGGUUGGCUUGGgCCAAGCUa -3' miRNA: 3'- -AAC-AGCU-----UCGAUCGAACCgGGUUCGG- -5' |
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28324 | 5' | -53.9 | NC_005905.1 | + | 17433 | 0.76 | 0.310707 |
Target: 5'- uUUGaUCGAgaccaGGUUGGCUUGGgCCAAGCUa -3' miRNA: 3'- -AAC-AGCU-----UCGAUCGAACCgGGUUCGG- -5' |
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28324 | 5' | -53.9 | NC_005905.1 | + | 17543 | 0.76 | 0.310707 |
Target: 5'- uUUGaUCGAgaccaGGUUGGCUUGGgCCAAGCUa -3' miRNA: 3'- -AAC-AGCU-----UCGAUCGAACCgGGUUCGG- -5' |
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28324 | 5' | -53.9 | NC_005905.1 | + | 17213 | 0.76 | 0.310707 |
Target: 5'- uUUGaUCGAgaccaGGUUGGCUUGGgCCAAGCUa -3' miRNA: 3'- -AAC-AGCU-----UCGAUCGAACCgGGUUCGG- -5' |
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28324 | 5' | -53.9 | NC_005905.1 | + | 8616 | 0.77 | 0.267244 |
Target: 5'- gUGUCcAGGCcGGCUUGGgCCAAGCUa -3' miRNA: 3'- aACAGcUUCGaUCGAACCgGGUUCGG- -5' |
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28324 | 5' | -53.9 | NC_005905.1 | + | 17743 | 0.78 | 0.24742 |
Target: 5'- uUUGUCGAAGCUAaCUcGGCaCAAGCCg -3' miRNA: 3'- -AACAGCUUCGAUcGAaCCGgGUUCGG- -5' |
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28324 | 5' | -53.9 | NC_005905.1 | + | 49017 | 0.79 | 0.200477 |
Target: 5'- --aUCGAGGCUcGgUUGGCUCAAGCCg -3' miRNA: 3'- aacAGCUUCGAuCgAACCGGGUUCGG- -5' |
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28324 | 5' | -53.9 | NC_005905.1 | + | 48972 | 0.79 | 0.200477 |
Target: 5'- --aUCGAGGCUcGgUUGGCUCAAGCCg -3' miRNA: 3'- aacAGCUUCGAuCgAACCGGGUUCGG- -5' |
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28324 | 5' | -53.9 | NC_005905.1 | + | 49152 | 0.79 | 0.200477 |
Target: 5'- --aUCGAGGCUcGgUUGGCUCAAGCCg -3' miRNA: 3'- aacAGCUUCGAuCgAACCGGGUUCGG- -5' |
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28324 | 5' | -53.9 | NC_005905.1 | + | 49107 | 0.79 | 0.200477 |
Target: 5'- --aUCGAGGCUcGgUUGGCUCAAGCCg -3' miRNA: 3'- aacAGCUUCGAuCgAACCGGGUUCGG- -5' |
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28324 | 5' | -53.9 | NC_005905.1 | + | 8693 | 0.82 | 0.136854 |
Target: 5'- uUUGUCGAAGCUAaaUcGGUCCAAGCCg -3' miRNA: 3'- -AACAGCUUCGAUcgAaCCGGGUUCGG- -5' |
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28324 | 5' | -53.9 | NC_005905.1 | + | 9022 | 0.83 | 0.115724 |
Target: 5'- uUUGUCGAAGCUAaCUcuGCCCAAGCCg -3' miRNA: 3'- -AACAGCUUCGAUcGAacCGGGUUCGG- -5' |
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28324 | 5' | -53.9 | NC_005905.1 | + | 21677 | 0.84 | 0.097671 |
Target: 5'- -cGUCGAAGCUAaCUUGGCCaAAGCCg -3' miRNA: 3'- aaCAGCUUCGAUcGAACCGGgUUCGG- -5' |
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28324 | 5' | -53.9 | NC_005905.1 | + | 22034 | 0.84 | 0.097671 |
Target: 5'- uUUGUCGAAGCUAaCUUGGCCaaagCAGGCCu -3' miRNA: 3'- -AACAGCUUCGAUcGAACCGG----GUUCGG- -5' |
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28324 | 5' | -53.9 | NC_005905.1 | + | 19399 | 0.85 | 0.077712 |
Target: 5'- --aUCcAGGCUAGCUUGGUCCAAGCCg -3' miRNA: 3'- aacAGcUUCGAUCGAACCGGGUUCGG- -5' |
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28324 | 5' | -53.9 | NC_005905.1 | + | 21991 | 0.87 | 0.063505 |
Target: 5'- -cGUCGAAGCUAaCUUGGCCCAaaccGGCCu -3' miRNA: 3'- aaCAGCUUCGAUcGAACCGGGU----UCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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