miRNA display CGI


Results 21 - 40 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28324 5' -53.9 NC_005905.1 + 21976 0.7 0.609662
Target:  5'- -aGUCuAGGCcGGCUUGGgCCAAGUUa -3'
miRNA:   3'- aaCAGcUUCGaUCGAACCgGGUUCGG- -5'
28324 5' -53.9 NC_005905.1 + 49332 0.71 0.533723
Target:  5'- --aUCGAGGCUcGgUcGGCUCAAGCCg -3'
miRNA:   3'- aacAGCUUCGAuCgAaCCGGGUUCGG- -5'
28324 5' -53.9 NC_005905.1 + 49287 0.71 0.533723
Target:  5'- --aUCGAGGCUcGgUcGGCUCAAGCCg -3'
miRNA:   3'- aacAGCUUCGAuCgAaCCGGGUUCGG- -5'
28324 5' -53.9 NC_005905.1 + 49062 0.71 0.533723
Target:  5'- --aUCGAGGCUcGgUcGGCUCAAGCCg -3'
miRNA:   3'- aacAGCUUCGAuCgAaCCGGGUUCGG- -5'
28324 5' -53.9 NC_005905.1 + 49197 0.71 0.533723
Target:  5'- --aUCGAGGCUcGgUcGGCUCAAGCCg -3'
miRNA:   3'- aacAGCUUCGAuCgAaCCGGGUUCGG- -5'
28324 5' -53.9 NC_005905.1 + 17819 0.72 0.523117
Target:  5'- -aGUUuAGGCcGGCUUGGgCCAAGCUa -3'
miRNA:   3'- aaCAGcUUCGaUCGAACCgGGUUCGG- -5'
28324 5' -53.9 NC_005905.1 + 19518 0.72 0.512594
Target:  5'- -aGUCcAGGCcGGCUUGGaCCAAGCUa -3'
miRNA:   3'- aaCAGcUUCGaUCGAACCgGGUUCGG- -5'
28324 5' -53.9 NC_005905.1 + 17644 0.72 0.512594
Target:  5'- -aGUCcAGGCcGGCUUGGaCCAAGCUa -3'
miRNA:   3'- aaCAGcUUCGaUCGAACCgGGUUCGG- -5'
28324 5' -53.9 NC_005905.1 + 9055 0.72 0.502158
Target:  5'- -aGUCcAGGUcGGCUUGGgCCAAGCUa -3'
miRNA:   3'- aaCAGcUUCGaUCGAACCgGGUUCGG- -5'
28324 5' -53.9 NC_005905.1 + 20067 0.72 0.502158
Target:  5'- -aGUCcAGGUcGGCUUGGgCCAAGCUa -3'
miRNA:   3'- aaCAGcUUCGaUCGAACCgGGUUCGG- -5'
28324 5' -53.9 NC_005905.1 + 21902 0.74 0.422473
Target:  5'- -cGUCGAAGCUAaCUUGGUUCAAaCCg -3'
miRNA:   3'- aaCAGCUUCGAUcGAACCGGGUUcGG- -5'
28324 5' -53.9 NC_005905.1 + 9010 0.75 0.359341
Target:  5'- -aGUCcAGGCcGGCUUGGgCCAAGCUa -3'
miRNA:   3'- aaCAGcUUCGaUCGAACCgGGUUCGG- -5'
28324 5' -53.9 NC_005905.1 + 20132 0.75 0.359341
Target:  5'- -aGUCcAGGCcGGCUUGGgCCAAGCUa -3'
miRNA:   3'- aaCAGcUUCGaUCGAACCgGGUUCGG- -5'
28324 5' -53.9 NC_005905.1 + 19957 0.75 0.359341
Target:  5'- -aGUCcAGGCcGGCUUGGgCCAAGCUa -3'
miRNA:   3'- aaCAGcUUCGaUCGAACCgGGUUCGG- -5'
28324 5' -53.9 NC_005905.1 + 19892 0.75 0.359341
Target:  5'- -aGUCcAGGCcGGCUUGGgCCAAGCUa -3'
miRNA:   3'- aaCAGcUUCGaUCGAACCgGGUUCGG- -5'
28324 5' -53.9 NC_005905.1 + 19782 0.75 0.359341
Target:  5'- -aGUCcAGGCcGGCUUGGgCCAAGCUa -3'
miRNA:   3'- aaCAGcUUCGaUCGAACCgGGUUCGG- -5'
28324 5' -53.9 NC_005905.1 + 19737 0.75 0.359341
Target:  5'- -aGUCcAGGCcGGCUUGGgCCAAGCUa -3'
miRNA:   3'- aaCAGcUUCGaUCGAACCgGGUUCGG- -5'
28324 5' -53.9 NC_005905.1 + 17709 0.75 0.359341
Target:  5'- -aGUCcAGGCcGGCUUGGgCCAAGCUa -3'
miRNA:   3'- aaCAGcUUCGaUCGAACCgGGUUCGG- -5'
28324 5' -53.9 NC_005905.1 + 8836 0.75 0.359341
Target:  5'- -aGUCcAGGCcGGCUUGGgCCAAGCUa -3'
miRNA:   3'- aaCAGcUUCGaUCGAACCgGGUUCGG- -5'
28324 5' -53.9 NC_005905.1 + 8791 0.75 0.359341
Target:  5'- -aGUCcAGGCcGGCUUGGgCCAAGCUa -3'
miRNA:   3'- aaCAGcUUCGaUCGAACCgGGUUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.