miRNA display CGI


Results 21 - 40 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28324 5' -53.9 NC_005905.1 + 21812 0.96 0.014591
Target:  5'- -cGUCGAAGCUAaCUUGGCCCAAGCCg -3'
miRNA:   3'- aaCAGCUUCGAUcGAACCGGGUUCGG- -5'
28324 5' -53.9 NC_005905.1 + 21767 0.96 0.014591
Target:  5'- -cGUCGAAGCUAaCUUGGCCCAAGCCg -3'
miRNA:   3'- aaCAGCUUCGAUcGAACCGGGUUCGG- -5'
28324 5' -53.9 NC_005905.1 + 21720 0.88 0.053353
Target:  5'- cUUGUCGAAGCUAaCUUGGUUCAAGCCg -3'
miRNA:   3'- -AACAGCUUCGAUcGAACCGGGUUCGG- -5'
28324 5' -53.9 NC_005905.1 + 21677 0.84 0.097671
Target:  5'- -cGUCGAAGCUAaCUUGGCCaAAGCCg -3'
miRNA:   3'- aaCAGCUUCGAUcGAACCGGgUUCGG- -5'
28324 5' -53.9 NC_005905.1 + 20132 0.75 0.359341
Target:  5'- -aGUCcAGGCcGGCUUGGgCCAAGCUa -3'
miRNA:   3'- aaCAGcUUCGaUCGAACCgGGUUCGG- -5'
28324 5' -53.9 NC_005905.1 + 20070 1.1 0.001557
Target:  5'- uUUGUCGAGGCUAGCUUGGCCCAAGCCg -3'
miRNA:   3'- -AACAGCUUCGAUCGAACCGGGUUCGG- -5'
28324 5' -53.9 NC_005905.1 + 20067 0.72 0.502158
Target:  5'- -aGUCcAGGUcGGCUUGGgCCAAGCUa -3'
miRNA:   3'- aaCAGcUUCGaUCGAACCgGGUUCGG- -5'
28324 5' -53.9 NC_005905.1 + 20010 1.1 0.001424
Target:  5'- uUUGUCGAAGCUAGCUUGGCCCAAGCCg -3'
miRNA:   3'- -AACAGCUUCGAUCGAACCGGGUUCGG- -5'
28324 5' -53.9 NC_005905.1 + 19957 0.75 0.359341
Target:  5'- -aGUCcAGGCcGGCUUGGgCCAAGCUa -3'
miRNA:   3'- aaCAGcUUCGaUCGAACCgGGUUCGG- -5'
28324 5' -53.9 NC_005905.1 + 19946 1.02 0.005797
Target:  5'- uUUGUCGAAGCUAGC-UGGCCCAAGCCg -3'
miRNA:   3'- -AACAGCUUCGAUCGaACCGGGUUCGG- -5'
28324 5' -53.9 NC_005905.1 + 19901 1.1 0.001424
Target:  5'- uUUGUCGAAGCUAGCUUGGCCCAAGCCg -3'
miRNA:   3'- -AACAGCUUCGAUCGAACCGGGUUCGG- -5'
28324 5' -53.9 NC_005905.1 + 19892 0.75 0.359341
Target:  5'- -aGUCcAGGCcGGCUUGGgCCAAGCUa -3'
miRNA:   3'- aaCAGcUUCGaUCGAACCgGGUUCGG- -5'
28324 5' -53.9 NC_005905.1 + 19836 1.1 0.001424
Target:  5'- uUUGUCGAAGCUAGCUUGGCCCAAGCCg -3'
miRNA:   3'- -AACAGCUUCGAUCGAACCGGGUUCGG- -5'
28324 5' -53.9 NC_005905.1 + 19782 0.75 0.359341
Target:  5'- -aGUCcAGGCcGGCUUGGgCCAAGCUa -3'
miRNA:   3'- aaCAGcUUCGaUCGAACCgGGUUCGG- -5'
28324 5' -53.9 NC_005905.1 + 19771 1.1 0.001424
Target:  5'- uUUGUCGAAGCUAGCUUGGCCCAAGCCg -3'
miRNA:   3'- -AACAGCUUCGAUCGAACCGGGUUCGG- -5'
28324 5' -53.9 NC_005905.1 + 19737 0.75 0.359341
Target:  5'- -aGUCcAGGCcGGCUUGGgCCAAGCUa -3'
miRNA:   3'- aaCAGcUUCGaUCGAACCgGGUUCGG- -5'
28324 5' -53.9 NC_005905.1 + 19726 0.98 0.010212
Target:  5'- uUUGUCGAAGCUAaCUUGGCCCAAGCCg -3'
miRNA:   3'- -AACAGCUUCGAUcGAACCGGGUUCGG- -5'
28324 5' -53.9 NC_005905.1 + 19661 1.1 0.001557
Target:  5'- uUUGUCGAGGCUAGCUUGGCCCAAGCCg -3'
miRNA:   3'- -AACAGCUUCGAUCGAACCGGGUUCGG- -5'
28324 5' -53.9 NC_005905.1 + 19616 1.1 0.001424
Target:  5'- uUUGUCGAAGCUAGCUUGGCCCAAGCCg -3'
miRNA:   3'- -AACAGCUUCGAUCGAACCGGGUUCGG- -5'
28324 5' -53.9 NC_005905.1 + 19583 0.75 0.334378
Target:  5'- -aGUCcAAGCcGGCUUGGgCCAAGCUa -3'
miRNA:   3'- aaCAGcUUCGaUCGAACCgGGUUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.