Results 1 - 20 of 107 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28324 | 5' | -53.9 | NC_005905.1 | + | 49332 | 0.71 | 0.533723 |
Target: 5'- --aUCGAGGCUcGgUcGGCUCAAGCCg -3' miRNA: 3'- aacAGCUUCGAuCgAaCCGGGUUCGG- -5' |
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28324 | 5' | -53.9 | NC_005905.1 | + | 49287 | 0.71 | 0.533723 |
Target: 5'- --aUCGAGGCUcGgUcGGCUCAAGCCg -3' miRNA: 3'- aacAGCUUCGAuCgAaCCGGGUUCGG- -5' |
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28324 | 5' | -53.9 | NC_005905.1 | + | 49242 | 0.68 | 0.760735 |
Target: 5'- --aUUGAGGCUcGgUcGGCUCAAGCCg -3' miRNA: 3'- aacAGCUUCGAuCgAaCCGGGUUCGG- -5' |
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28324 | 5' | -53.9 | NC_005905.1 | + | 49197 | 0.71 | 0.533723 |
Target: 5'- --aUCGAGGCUcGgUcGGCUCAAGCCg -3' miRNA: 3'- aacAGCUUCGAuCgAaCCGGGUUCGG- -5' |
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28324 | 5' | -53.9 | NC_005905.1 | + | 49152 | 0.79 | 0.200477 |
Target: 5'- --aUCGAGGCUcGgUUGGCUCAAGCCg -3' miRNA: 3'- aacAGCUUCGAuCgAACCGGGUUCGG- -5' |
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28324 | 5' | -53.9 | NC_005905.1 | + | 49107 | 0.79 | 0.200477 |
Target: 5'- --aUCGAGGCUcGgUUGGCUCAAGCCg -3' miRNA: 3'- aacAGCUUCGAuCgAACCGGGUUCGG- -5' |
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28324 | 5' | -53.9 | NC_005905.1 | + | 49062 | 0.71 | 0.533723 |
Target: 5'- --aUCGAGGCUcGgUcGGCUCAAGCCg -3' miRNA: 3'- aacAGCUUCGAuCgAaCCGGGUUCGG- -5' |
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28324 | 5' | -53.9 | NC_005905.1 | + | 49017 | 0.79 | 0.200477 |
Target: 5'- --aUCGAGGCUcGgUUGGCUCAAGCCg -3' miRNA: 3'- aacAGCUUCGAuCgAACCGGGUUCGG- -5' |
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28324 | 5' | -53.9 | NC_005905.1 | + | 48972 | 0.79 | 0.200477 |
Target: 5'- --aUCGAGGCUcGgUUGGCUCAAGCCg -3' miRNA: 3'- aacAGCUUCGAuCgAACCGGGUUCGG- -5' |
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28324 | 5' | -53.9 | NC_005905.1 | + | 48928 | 0.69 | 0.697344 |
Target: 5'- ---cCGAAGCUcGgUcGGCUCAAGCCg -3' miRNA: 3'- aacaGCUUCGAuCgAaCCGGGUUCGG- -5' |
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28324 | 5' | -53.9 | NC_005905.1 | + | 22156 | 0.66 | 0.846207 |
Target: 5'- -aGUCGAGGCcuGCuUUGGCCaaguuAGCUu -3' miRNA: 3'- aaCAGCUUCGauCG-AACCGGgu---UCGG- -5' |
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28324 | 5' | -53.9 | NC_005905.1 | + | 22111 | 0.66 | 0.854708 |
Target: 5'- -aGUCuAGGCcGGUUUGGgCCAAGUUa -3' miRNA: 3'- aaCAGcUUCGaUCGAACCgGGUUCGG- -5' |
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28324 | 5' | -53.9 | NC_005905.1 | + | 22034 | 0.84 | 0.097671 |
Target: 5'- uUUGUCGAAGCUAaCUUGGCCaaagCAGGCCu -3' miRNA: 3'- -AACAGCUUCGAUcGAACCGG----GUUCGG- -5' |
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28324 | 5' | -53.9 | NC_005905.1 | + | 21991 | 0.87 | 0.063505 |
Target: 5'- -cGUCGAAGCUAaCUUGGCCCAaaccGGCCu -3' miRNA: 3'- aaCAGCUUCGAUcGAACCGGGU----UCGG- -5' |
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28324 | 5' | -53.9 | NC_005905.1 | + | 21976 | 0.7 | 0.609662 |
Target: 5'- -aGUCuAGGCcGGCUUGGgCCAAGUUa -3' miRNA: 3'- aaCAGcUUCGaUCGAACCgGGUUCGG- -5' |
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28324 | 5' | -53.9 | NC_005905.1 | + | 21945 | 0.92 | 0.028827 |
Target: 5'- uUUGUCGAAGCUA-CUUGGCUCAAGCCg -3' miRNA: 3'- -AACAGCUUCGAUcGAACCGGGUUCGG- -5' |
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28324 | 5' | -53.9 | NC_005905.1 | + | 21931 | 0.7 | 0.609662 |
Target: 5'- -aGUCuAGGCcGGCUUGGgCCAAGUUa -3' miRNA: 3'- aaCAGcUUCGaUCGAACCgGGUUCGG- -5' |
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28324 | 5' | -53.9 | NC_005905.1 | + | 21902 | 0.74 | 0.422473 |
Target: 5'- -cGUCGAAGCUAaCUUGGUUCAAaCCg -3' miRNA: 3'- aaCAGCUUCGAUcGAACCGGGUUcGG- -5' |
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28324 | 5' | -53.9 | NC_005905.1 | + | 21886 | 0.7 | 0.609662 |
Target: 5'- -aGUCuAGGCcGGCUUGGgCCAAGUUa -3' miRNA: 3'- aaCAGcUUCGaUCGAACCgGGUUCGG- -5' |
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28324 | 5' | -53.9 | NC_005905.1 | + | 21857 | 0.96 | 0.014591 |
Target: 5'- -cGUCGAAGCUAaCUUGGCCCAAGCCg -3' miRNA: 3'- aaCAGCUUCGAUcGAACCGGGUUCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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