miRNA display CGI


Results 1 - 20 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28324 5' -53.9 NC_005905.1 + 8616 0.77 0.267244
Target:  5'- gUGUCcAGGCcGGCUUGGgCCAAGCUa -3'
miRNA:   3'- aACAGcUUCGaUCGAACCgGGUUCGG- -5'
28324 5' -53.9 NC_005905.1 + 8678 0.69 0.66464
Target:  5'- --aUCGAguccAGCccGGCUUGGgCCAAGCUa -3'
miRNA:   3'- aacAGCU----UCGa-UCGAACCgGGUUCGG- -5'
28324 5' -53.9 NC_005905.1 + 8693 0.82 0.136854
Target:  5'- uUUGUCGAAGCUAaaUcGGUCCAAGCCg -3'
miRNA:   3'- -AACAGCUUCGAUcgAaCCGGGUUCGG- -5'
28324 5' -53.9 NC_005905.1 + 8738 1.1 0.001424
Target:  5'- uUUGUCGAAGCUAGCUUGGCCCAAGCCg -3'
miRNA:   3'- -AACAGCUUCGAUCGAACCGGGUUCGG- -5'
28324 5' -53.9 NC_005905.1 + 8791 0.75 0.359341
Target:  5'- -aGUCcAGGCcGGCUUGGgCCAAGCUa -3'
miRNA:   3'- aaCAGcUUCGaUCGAACCgGGUUCGG- -5'
28324 5' -53.9 NC_005905.1 + 8803 1.1 0.001424
Target:  5'- uUUGUCGAAGCUAGCUUGGCCCAAGCCg -3'
miRNA:   3'- -AACAGCUUCGAUCGAACCGGGUUCGG- -5'
28324 5' -53.9 NC_005905.1 + 8836 0.75 0.359341
Target:  5'- -aGUCcAGGCcGGCUUGGgCCAAGCUa -3'
miRNA:   3'- aaCAGcUUCGaUCGAACCgGGUUCGG- -5'
28324 5' -53.9 NC_005905.1 + 8848 1.11 0.001382
Target:  5'- aUUGUCGAAGCUAGCUUGGCCCAAGCCg -3'
miRNA:   3'- -AACAGCUUCGAUCGAACCGGGUUCGG- -5'
28324 5' -53.9 NC_005905.1 + 8912 1.1 0.001424
Target:  5'- uUUGUCGAAGCUAGCUUGGCCCAAGCCg -3'
miRNA:   3'- -AACAGCUUCGAUCGAACCGGGUUCGG- -5'
28324 5' -53.9 NC_005905.1 + 8956 1.1 0.001511
Target:  5'- cUGUCGAAGCUAGCUUGGCCCAAGCCg -3'
miRNA:   3'- aACAGCUUCGAUCGAACCGGGUUCGG- -5'
28324 5' -53.9 NC_005905.1 + 9010 0.75 0.359341
Target:  5'- -aGUCcAGGCcGGCUUGGgCCAAGCUa -3'
miRNA:   3'- aaCAGcUUCGaUCGAACCgGGUUCGG- -5'
28324 5' -53.9 NC_005905.1 + 9022 0.83 0.115724
Target:  5'- uUUGUCGAAGCUAaCUcuGCCCAAGCCg -3'
miRNA:   3'- -AACAGCUUCGAUcGAacCGGGUUCGG- -5'
28324 5' -53.9 NC_005905.1 + 9055 0.72 0.502158
Target:  5'- -aGUCcAGGUcGGCUUGGgCCAAGCUa -3'
miRNA:   3'- aaCAGcUUCGaUCGAACCgGGUUCGG- -5'
28324 5' -53.9 NC_005905.1 + 9067 1.05 0.00349
Target:  5'- uUUGUCGAAGCUAGCUUGGCUCAAGCCg -3'
miRNA:   3'- -AACAGCUUCGAUCGAACCGGGUUCGG- -5'
28324 5' -53.9 NC_005905.1 + 9132 1.1 0.001424
Target:  5'- uUUGUCGAAGCUAGCUUGGCCCAAGCCg -3'
miRNA:   3'- -AACAGCUUCGAUCGAACCGGGUUCGG- -5'
28324 5' -53.9 NC_005905.1 + 9177 1.1 0.001424
Target:  5'- uUUGUCGAAGCUAGCUUGGCCCAAGCCg -3'
miRNA:   3'- -AACAGCUUCGAUCGAACCGGGUUCGG- -5'
28324 5' -53.9 NC_005905.1 + 11091 0.66 0.862976
Target:  5'- uUUGcCGAguccAGaCcGGCUUGGgCCAAGCUa -3'
miRNA:   3'- -AACaGCU----UC-GaUCGAACCgGGUUCGG- -5'
28324 5' -53.9 NC_005905.1 + 11156 0.66 0.862976
Target:  5'- uUUGcCGAguccAGaCcGGCUUGGgCCAAGCUa -3'
miRNA:   3'- -AACaGCU----UC-GaUCGAACCgGGUUCGG- -5'
28324 5' -53.9 NC_005905.1 + 11217 1.02 0.005626
Target:  5'- --aUCGAAGCUAGCUUGGCCCAAGCCg -3'
miRNA:   3'- aacAGCUUCGAUCGAACCGGGUUCGG- -5'
28324 5' -53.9 NC_005905.1 + 11221 0.66 0.862976
Target:  5'- uUUGcCGAguccAGaCcGGCUUGGgCCAAGCUa -3'
miRNA:   3'- -AACaGCU----UC-GaUCGAACCgGGUUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.