miRNA display CGI


Results 1 - 20 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28324 5' -53.9 NC_005905.1 + 21767 0.96 0.014591
Target:  5'- -cGUCGAAGCUAaCUUGGCCCAAGCCg -3'
miRNA:   3'- aaCAGCUUCGAUcGAACCGGGUUCGG- -5'
28324 5' -53.9 NC_005905.1 + 19661 1.1 0.001557
Target:  5'- uUUGUCGAGGCUAGCUUGGCCCAAGCCg -3'
miRNA:   3'- -AACAGCUUCGAUCGAACCGGGUUCGG- -5'
28324 5' -53.9 NC_005905.1 + 20070 1.1 0.001557
Target:  5'- uUUGUCGAGGCUAGCUUGGCCCAAGCCg -3'
miRNA:   3'- -AACAGCUUCGAUCGAACCGGGUUCGG- -5'
28324 5' -53.9 NC_005905.1 + 17083 1.07 0.002667
Target:  5'- uUUGUUGAAGCUAGCUUGGCCCAAGCCa -3'
miRNA:   3'- -AACAGCUUCGAUCGAACCGGGUUCGG- -5'
28324 5' -53.9 NC_005905.1 + 17523 1.05 0.00319
Target:  5'- uUUGUCGAAGCUAGCUUGGUCCAAGCCg -3'
miRNA:   3'- -AACAGCUUCGAUCGAACCGGGUUCGG- -5'
28324 5' -53.9 NC_005905.1 + 17653 1.05 0.00319
Target:  5'- uUUGUCGAAGCUAGCUUGGUCCAAGCCg -3'
miRNA:   3'- -AACAGCUUCGAUCGAACCGGGUUCGG- -5'
28324 5' -53.9 NC_005905.1 + 19946 1.02 0.005797
Target:  5'- uUUGUCGAAGCUAGC-UGGCCCAAGCCg -3'
miRNA:   3'- -AACAGCUUCGAUCGaACCGGGUUCGG- -5'
28324 5' -53.9 NC_005905.1 + 19551 0.98 0.010212
Target:  5'- uUUGUCGAAGCUAGCUUGGCCCAAGaCg -3'
miRNA:   3'- -AACAGCUUCGAUCGAACCGGGUUCgG- -5'
28324 5' -53.9 NC_005905.1 + 19726 0.98 0.010212
Target:  5'- uUUGUCGAAGCUAaCUUGGCCCAAGCCg -3'
miRNA:   3'- -AACAGCUUCGAUcGAACCGGGUUCGG- -5'
28324 5' -53.9 NC_005905.1 + 20010 1.1 0.001424
Target:  5'- uUUGUCGAAGCUAGCUUGGCCCAAGCCg -3'
miRNA:   3'- -AACAGCUUCGAUCGAACCGGGUUCGG- -5'
28324 5' -53.9 NC_005905.1 + 19901 1.1 0.001424
Target:  5'- uUUGUCGAAGCUAGCUUGGCCCAAGCCg -3'
miRNA:   3'- -AACAGCUUCGAUCGAACCGGGUUCGG- -5'
28324 5' -53.9 NC_005905.1 + 19836 1.1 0.001424
Target:  5'- uUUGUCGAAGCUAGCUUGGCCCAAGCCg -3'
miRNA:   3'- -AACAGCUUCGAUCGAACCGGGUUCGG- -5'
28324 5' -53.9 NC_005905.1 + 17303 1.1 0.001424
Target:  5'- uUUGUCGAAGCUAGCUUGGCCCAAGCCa -3'
miRNA:   3'- -AACAGCUUCGAUCGAACCGGGUUCGG- -5'
28324 5' -53.9 NC_005905.1 + 17413 1.1 0.001424
Target:  5'- uUUGUCGAAGCUAGCUUGGCCCAAGCCa -3'
miRNA:   3'- -AACAGCUUCGAUCGAACCGGGUUCGG- -5'
28324 5' -53.9 NC_005905.1 + 17588 1.1 0.001424
Target:  5'- uUUGUCGAAGCUAGCUUGGCCCAAGCCg -3'
miRNA:   3'- -AACAGCUUCGAUCGAACCGGGUUCGG- -5'
28324 5' -53.9 NC_005905.1 + 17698 1.1 0.001424
Target:  5'- uUUGUCGAAGCUAGCUUGGCCCAAGCCg -3'
miRNA:   3'- -AACAGCUUCGAUCGAACCGGGUUCGG- -5'
28324 5' -53.9 NC_005905.1 + 19461 1.1 0.001424
Target:  5'- uUUGUCGAAGCUAGCUUGGCCCAAGCCg -3'
miRNA:   3'- -AACAGCUUCGAUCGAACCGGGUUCGG- -5'
28324 5' -53.9 NC_005905.1 + 19506 1.1 0.001424
Target:  5'- uUUGUCGAAGCUAGCUUGGCCCAAGCCg -3'
miRNA:   3'- -AACAGCUUCGAUCGAACCGGGUUCGG- -5'
28324 5' -53.9 NC_005905.1 + 19616 1.1 0.001424
Target:  5'- uUUGUCGAAGCUAGCUUGGCCCAAGCCg -3'
miRNA:   3'- -AACAGCUUCGAUCGAACCGGGUUCGG- -5'
28324 5' -53.9 NC_005905.1 + 19771 1.1 0.001424
Target:  5'- uUUGUCGAAGCUAGCUUGGCCCAAGCCg -3'
miRNA:   3'- -AACAGCUUCGAUCGAACCGGGUUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.