miRNA display CGI


Results 1 - 20 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28324 5' -53.9 NC_005905.1 + 22111 0.66 0.854708
Target:  5'- -aGUCuAGGCcGGUUUGGgCCAAGUUa -3'
miRNA:   3'- aaCAGcUUCGaUCGAACCgGGUUCGG- -5'
28324 5' -53.9 NC_005905.1 + 17213 0.76 0.310707
Target:  5'- uUUGaUCGAgaccaGGUUGGCUUGGgCCAAGCUa -3'
miRNA:   3'- -AAC-AGCU-----UCGAUCGAACCgGGUUCGG- -5'
28324 5' -53.9 NC_005905.1 + 17433 0.76 0.310707
Target:  5'- uUUGaUCGAgaccaGGUUGGCUUGGgCCAAGCUa -3'
miRNA:   3'- -AAC-AGCU-----UCGAUCGAACCgGGUUCGG- -5'
28324 5' -53.9 NC_005905.1 + 8848 1.11 0.001382
Target:  5'- aUUGUCGAAGCUAGCUUGGCCCAAGCCg -3'
miRNA:   3'- -AACAGCUUCGAUCGAACCGGGUUCGG- -5'
28324 5' -53.9 NC_005905.1 + 21931 0.7 0.609662
Target:  5'- -aGUCuAGGCcGGCUUGGgCCAAGUUa -3'
miRNA:   3'- aaCAGcUUCGaUCGAACCgGGUUCGG- -5'
28324 5' -53.9 NC_005905.1 + 21976 0.7 0.609662
Target:  5'- -aGUCuAGGCcGGCUUGGgCCAAGUUa -3'
miRNA:   3'- aaCAGcUUCGaUCGAACCgGGUUCGG- -5'
28324 5' -53.9 NC_005905.1 + 17644 0.72 0.512594
Target:  5'- -aGUCcAGGCcGGCUUGGaCCAAGCUa -3'
miRNA:   3'- aaCAGcUUCGaUCGAACCgGGUUCGG- -5'
28324 5' -53.9 NC_005905.1 + 19518 0.72 0.512594
Target:  5'- -aGUCcAGGCcGGCUUGGaCCAAGCUa -3'
miRNA:   3'- aaCAGcUUCGaUCGAACCgGGUUCGG- -5'
28324 5' -53.9 NC_005905.1 + 19737 0.75 0.359341
Target:  5'- -aGUCcAGGCcGGCUUGGgCCAAGCUa -3'
miRNA:   3'- aaCAGcUUCGaUCGAACCgGGUUCGG- -5'
28324 5' -53.9 NC_005905.1 + 19583 0.75 0.334378
Target:  5'- -aGUCcAAGCcGGCUUGGgCCAAGCUa -3'
miRNA:   3'- aaCAGcUUCGaUCGAACCgGGUUCGG- -5'
28324 5' -53.9 NC_005905.1 + 19892 0.75 0.359341
Target:  5'- -aGUCcAGGCcGGCUUGGgCCAAGCUa -3'
miRNA:   3'- aaCAGcUUCGaUCGAACCgGGUUCGG- -5'
28324 5' -53.9 NC_005905.1 + 17709 0.75 0.359341
Target:  5'- -aGUCcAGGCcGGCUUGGgCCAAGCUa -3'
miRNA:   3'- aaCAGcUUCGaUCGAACCgGGUUCGG- -5'
28324 5' -53.9 NC_005905.1 + 22156 0.66 0.846207
Target:  5'- -aGUCGAGGCcuGCuUUGGCCaaguuAGCUu -3'
miRNA:   3'- aaCAGCUUCGauCG-AACCGGgu---UCGG- -5'
28324 5' -53.9 NC_005905.1 + 19957 0.75 0.359341
Target:  5'- -aGUCcAGGCcGGCUUGGgCCAAGCUa -3'
miRNA:   3'- aaCAGcUUCGaUCGAACCgGGUUCGG- -5'
28324 5' -53.9 NC_005905.1 + 17778 0.68 0.729477
Target:  5'- --aUCGAauccaGGCcGGCUUGGaCCAAGCUa -3'
miRNA:   3'- aacAGCU-----UCGaUCGAACCgGGUUCGG- -5'
28324 5' -53.9 NC_005905.1 + 20067 0.72 0.502158
Target:  5'- -aGUCcAGGUcGGCUUGGgCCAAGCUa -3'
miRNA:   3'- aaCAGcUUCGaUCGAACCgGGUUCGG- -5'
28324 5' -53.9 NC_005905.1 + 20132 0.75 0.359341
Target:  5'- -aGUCcAGGCcGGCUUGGgCCAAGCUa -3'
miRNA:   3'- aaCAGcUUCGaUCGAACCgGGUUCGG- -5'
28324 5' -53.9 NC_005905.1 + 17323 0.76 0.310707
Target:  5'- uUUGaUCGAgaccaGGUUGGCUUGGgCCAAGCUa -3'
miRNA:   3'- -AAC-AGCU-----UCGAUCGAACCgGGUUCGG- -5'
28324 5' -53.9 NC_005905.1 + 21886 0.7 0.609662
Target:  5'- -aGUCuAGGCcGGCUUGGgCCAAGUUa -3'
miRNA:   3'- aaCAGcUUCGaUCGAACCgGGUUCGG- -5'
28324 5' -53.9 NC_005905.1 + 17819 0.72 0.523117
Target:  5'- -aGUUuAGGCcGGCUUGGgCCAAGCUa -3'
miRNA:   3'- aaCAGcUUCGaUCGAACCgGGUUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.