Results 41 - 60 of 103 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28325 | 3' | -58.2 | NC_005905.1 | + | 17144 | 1 | 0.003758 |
Target: 5'- cGGCCCAAGCCGGgCUGGACUCGAUAAa -3' miRNA: 3'- -CCGGGUUCGGCCgGACCUGAGCUAUU- -5' |
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28325 | 3' | -58.2 | NC_005905.1 | + | 17209 | 0.78 | 0.142572 |
Target: 5'- uGGCCCAAGCCaaCCUGGuCUCGAUc- -3' miRNA: 3'- -CCGGGUUCGGccGGACCuGAGCUAuu -5' |
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28325 | 3' | -58.2 | NC_005905.1 | + | 17250 | 0.68 | 0.536948 |
Target: 5'- aGUCCAGcCCGGCUUGGGC-CGAg-- -3' miRNA: 3'- cCGGGUUcGGCCGGACCUGaGCUauu -5' |
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28325 | 3' | -58.2 | NC_005905.1 | + | 17254 | 0.84 | 0.050262 |
Target: 5'- cGGCCUAAGCCGGgCUGaACUCGAUAAa -3' miRNA: 3'- -CCGGGUUCGGCCgGACcUGAGCUAUU- -5' |
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28325 | 3' | -58.2 | NC_005905.1 | + | 17319 | 0.78 | 0.142572 |
Target: 5'- uGGCCCAAGCCaaCCUGGuCUCGAUc- -3' miRNA: 3'- -CCGGGUUCGGccGGACCuGAGCUAuu -5' |
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28325 | 3' | -58.2 | NC_005905.1 | + | 17364 | 0.84 | 0.050262 |
Target: 5'- cGGCCUAAGCCGGgCUGaACUCGAUAAa -3' miRNA: 3'- -CCGGGUUCGGCCgGACcUGAGCUAUU- -5' |
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28325 | 3' | -58.2 | NC_005905.1 | + | 17429 | 0.78 | 0.142572 |
Target: 5'- uGGCCCAAGCCaaCCUGGuCUCGAUc- -3' miRNA: 3'- -CCGGGUUCGGccGGACCuGAGCUAuu -5' |
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28325 | 3' | -58.2 | NC_005905.1 | + | 17474 | 0.84 | 0.050262 |
Target: 5'- cGGCCUAAGCCGGgCUGaACUCGAUAAa -3' miRNA: 3'- -CCGGGUUCGGCCgGACcUGAGCUAUU- -5' |
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28325 | 3' | -58.2 | NC_005905.1 | + | 17539 | 1.03 | 0.002116 |
Target: 5'- uGGUCCAAGCCGGCCUGGACUCGAUAAa -3' miRNA: 3'- -CCGGGUUCGGCCGGACCUGAGCUAUU- -5' |
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28325 | 3' | -58.2 | NC_005905.1 | + | 17604 | 1.08 | 0.000974 |
Target: 5'- uGGCCCAAGCCGGCCUGGACUCGAUAAa -3' miRNA: 3'- -CCGGGUUCGGCCGGACCUGAGCUAUU- -5' |
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28325 | 3' | -58.2 | NC_005905.1 | + | 17644 | 0.76 | 0.171486 |
Target: 5'- aGUCCAGGCCGGCUUGGACcaagcuagcuUCGAc-- -3' miRNA: 3'- cCGGGUUCGGCCGGACCUG----------AGCUauu -5' |
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28325 | 3' | -58.2 | NC_005905.1 | + | 17669 | 0.99 | 0.004096 |
Target: 5'- uGGUCCAAGCCGGCCUGGAUUCGAUAAa -3' miRNA: 3'- -CCGGGUUCGGCCGGACCUGAGCUAUU- -5' |
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28325 | 3' | -58.2 | NC_005905.1 | + | 17709 | 0.75 | 0.200326 |
Target: 5'- aGUCCAGGCCGGCUUGGGCcaagcuagcuUCGAc-- -3' miRNA: 3'- cCGGGUUCGGCCGGACCUG----------AGCUauu -5' |
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28325 | 3' | -58.2 | NC_005905.1 | + | 17714 | 0.9 | 0.018671 |
Target: 5'- uGGCCCAAGCCGGCCUaaACUCGAUAAa -3' miRNA: 3'- -CCGGGUUCGGCCGGAccUGAGCUAUU- -5' |
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28325 | 3' | -58.2 | NC_005905.1 | + | 17773 | 0.72 | 0.335649 |
Target: 5'- -aUCCAGGCCGGCUUGGACcaagcuagcuUCGAc-- -3' miRNA: 3'- ccGGGUUCGGCCGGACCUG----------AGCUauu -5' |
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28325 | 3' | -58.2 | NC_005905.1 | + | 17819 | 0.67 | 0.599452 |
Target: 5'- aGUUUAGGCCGGCUUGGGCcaagcuagcuUCGAc-- -3' miRNA: 3'- cCGGGUUCGGCCGGACCUG----------AGCUauu -5' |
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28325 | 3' | -58.2 | NC_005905.1 | + | 17824 | 0.72 | 0.320289 |
Target: 5'- uGGCCCAAaCCGGaCUGGACUUuAUAAa -3' miRNA: 3'- -CCGGGUUcGGCCgGACCUGAGcUAUU- -5' |
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28325 | 3' | -58.2 | NC_005905.1 | + | 19412 | 1.03 | 0.002116 |
Target: 5'- uGGUCCAAGCCGGCCUGGACUCGAUAAa -3' miRNA: 3'- -CCGGGUUCGGCCGGACCUGAGCUAUU- -5' |
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28325 | 3' | -58.2 | NC_005905.1 | + | 19477 | 1.03 | 0.002116 |
Target: 5'- uGGCCCAAGCCGGCUUGGACUCGAUAAa -3' miRNA: 3'- -CCGGGUUCGGCCGGACCUGAGCUAUU- -5' |
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28325 | 3' | -58.2 | NC_005905.1 | + | 19518 | 0.75 | 0.195242 |
Target: 5'- aGUCCAGGCCGGCUUGGACcaagcuagccUgGAUAAa -3' miRNA: 3'- cCGGGUUCGGCCGGACCUG----------AgCUAUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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