miRNA display CGI


Results 21 - 40 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28325 3' -58.2 NC_005905.1 + 11334 0.96 0.007064
Target:  5'- uGGCCCAAGCCGGUCUGGACUCGGc-- -3'
miRNA:   3'- -CCGGGUUCGGCCGGACCUGAGCUauu -5'
28325 3' -58.2 NC_005905.1 + 11358 0.7 0.438695
Target:  5'- aGUCCAGaCCGGCUUGGGCcaagcuagcuUCGAUAAa -3'
miRNA:   3'- cCGGGUUcGGCCGGACCUG----------AGCUAUU- -5'
28325 3' -58.2 NC_005905.1 + 11399 0.96 0.007064
Target:  5'- uGGCCCAAGCCGGUCUGGACUCGGc-- -3'
miRNA:   3'- -CCGGGUUCGGCCGGACCUGAGCUauu -5'
28325 3' -58.2 NC_005905.1 + 11423 0.7 0.438695
Target:  5'- aGUCCAGaCCGGCUUGGGCcaagcuagcuUCGAUAAa -3'
miRNA:   3'- cCGGGUUcGGCCGGACCUG----------AGCUAUU- -5'
28325 3' -58.2 NC_005905.1 + 11464 0.96 0.007064
Target:  5'- uGGCCCAAGCCGGUCUGGACUCGGc-- -3'
miRNA:   3'- -CCGGGUUCGGCCGGACCUGAGCUauu -5'
28325 3' -58.2 NC_005905.1 + 11488 0.7 0.438695
Target:  5'- aGUCCAGaCCGGCUUGGGCcaagcuagcuUCGAUAAa -3'
miRNA:   3'- cCGGGUUcGGCCGGACCUG----------AGCUAUU- -5'
28325 3' -58.2 NC_005905.1 + 11529 0.96 0.007064
Target:  5'- uGGCCCAAGCCGGUCUGGACUCGGc-- -3'
miRNA:   3'- -CCGGGUUCGGCCGGACCUGAGCUauu -5'
28325 3' -58.2 NC_005905.1 + 11553 0.7 0.438695
Target:  5'- aGUCCAGaCCGGCUUGGGCcaagcuagcuUCGAUAAa -3'
miRNA:   3'- cCGGGUUcGGCCGGACCUG----------AGCUAUU- -5'
28325 3' -58.2 NC_005905.1 + 11594 0.96 0.007064
Target:  5'- uGGCCCAAGCCGGUCUGGACUCGGc-- -3'
miRNA:   3'- -CCGGGUUCGGCCGGACCUGAGCUauu -5'
28325 3' -58.2 NC_005905.1 + 11618 0.7 0.438695
Target:  5'- aGUCCAGaCCGGCUUGGGCcaagcuagcuUCGAUAAa -3'
miRNA:   3'- cCGGGUUcGGCCGGACCUG----------AGCUAUU- -5'
28325 3' -58.2 NC_005905.1 + 11658 0.96 0.007064
Target:  5'- uGGCCCAAGCCGGUCUGGACUCGGc-- -3'
miRNA:   3'- -CCGGGUUCGGCCGGACCUGAGCUauu -5'
28325 3' -58.2 NC_005905.1 + 11683 0.7 0.438695
Target:  5'- aGUCCAGaCCGGCUUGGGCcaagcuagcuUCGAUAAa -3'
miRNA:   3'- cCGGGUUcGGCCGGACCUG----------AGCUAUU- -5'
28325 3' -58.2 NC_005905.1 + 11723 0.96 0.007064
Target:  5'- uGGCCCAAGCCGGUCUGGACUCGGc-- -3'
miRNA:   3'- -CCGGGUUCGGCCGGACCUGAGCUauu -5'
28325 3' -58.2 NC_005905.1 + 11748 0.7 0.438695
Target:  5'- aGUCCAGaCCGGCUUGGGCcaagcuagcuUCGAUAAa -3'
miRNA:   3'- cCGGGUUcGGCCGGACCUG----------AGCUAUU- -5'
28325 3' -58.2 NC_005905.1 + 11788 0.96 0.007064
Target:  5'- uGGCCCAAGCCGGUCUGGACUCGGc-- -3'
miRNA:   3'- -CCGGGUUCGGCCGGACCUGAGCUauu -5'
28325 3' -58.2 NC_005905.1 + 11813 0.7 0.438695
Target:  5'- aGUCCAGaCCGGCUUGGGCcaagcuagcuUCGAUAAg -3'
miRNA:   3'- cCGGGUUcGGCCGGACCUG----------AGCUAUU- -5'
28325 3' -58.2 NC_005905.1 + 11853 0.96 0.007064
Target:  5'- uGGCCCAAGCCGGUCUGGACUCGGc-- -3'
miRNA:   3'- -CCGGGUUCGGCCGGACCUGAGCUauu -5'
28325 3' -58.2 NC_005905.1 + 11918 0.96 0.007064
Target:  5'- uGGCCCAAGCCGGUCUGGACUCGGc-- -3'
miRNA:   3'- -CCGGGUUCGGCCGGACCUGAGCUauu -5'
28325 3' -58.2 NC_005905.1 + 17034 0.95 0.008883
Target:  5'- cGGCUCAAGCCGGgCUGGACUCGAUAAa -3'
miRNA:   3'- -CCGGGUUCGGCCgGACCUGAGCUAUU- -5'
28325 3' -58.2 NC_005905.1 + 17099 0.78 0.142572
Target:  5'- uGGCCCAAGCCaaCCUGGuCUCGAUc- -3'
miRNA:   3'- -CCGGGUUCGGccGGACCuGAGCUAuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.