miRNA display CGI


Results 1 - 20 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28325 3' -58.2 NC_005905.1 + 8617 0.75 0.21084
Target:  5'- uGUCCAGGCCGGCUUGGGCcaagcuagcuUCGAc-- -3'
miRNA:   3'- cCGGGUUCGGCCGGACCUG----------AGCUauu -5'
28325 3' -58.2 NC_005905.1 + 8722 0.97 0.00578
Target:  5'- uGGCCCAAGCCGGCCUGGACaCGGUAAa -3'
miRNA:   3'- -CCGGGUUCGGCCGGACCUGaGCUAUU- -5'
28325 3' -58.2 NC_005905.1 + 8787 0.99 0.004096
Target:  5'- uGGCCCAAGCCGGgCUGGACUCGAUAAa -3'
miRNA:   3'- -CCGGGUUCGGCCgGACCUGAGCUAUU- -5'
28325 3' -58.2 NC_005905.1 + 8791 0.75 0.200326
Target:  5'- aGUCCAGGCCGGCUUGGGCcaagcuagcuUCGAc-- -3'
miRNA:   3'- cCGGGUUCGGCCGGACCUG----------AGCUauu -5'
28325 3' -58.2 NC_005905.1 + 8832 0.98 0.005153
Target:  5'- uGGCCCAAGCCGGUUUGGACUCGGUAAa -3'
miRNA:   3'- -CCGGGUUCGGCCGGACCUGAGCUAUU- -5'
28325 3' -58.2 NC_005905.1 + 8836 0.75 0.200326
Target:  5'- aGUCCAGGCCGGCUUGGGCcaagcuagcuUCGAc-- -3'
miRNA:   3'- cCGGGUUCGGCCGGACCUG----------AGCUauu -5'
28325 3' -58.2 NC_005905.1 + 8896 1.08 0.000974
Target:  5'- uGGCCCAAGCCGGCCUGGACUCGAUAAa -3'
miRNA:   3'- -CCGGGUUCGGCCGGACCUGAGCUAUU- -5'
28325 3' -58.2 NC_005905.1 + 8941 1.07 0.001157
Target:  5'- uGGCCCAAGCCGGCCUGGACUCGGUAAa -3'
miRNA:   3'- -CCGGGUUCGGCCGGACCUGAGCUAUU- -5'
28325 3' -58.2 NC_005905.1 + 9005 0.95 0.008389
Target:  5'- uGCCCAAGCCGGgCUGGACUCGAUAAa -3'
miRNA:   3'- cCGGGUUCGGCCgGACCUGAGCUAUU- -5'
28325 3' -58.2 NC_005905.1 + 9010 0.75 0.200326
Target:  5'- aGUCCAGGCCGGCUUGGGCcaagcuagcuUCGAc-- -3'
miRNA:   3'- cCGGGUUCGGCCGGACCUG----------AGCUauu -5'
28325 3' -58.2 NC_005905.1 + 9051 1.02 0.00274
Target:  5'- uGGCUCAAGCCGGCCUGGACUCGGUAAa -3'
miRNA:   3'- -CCGGGUUCGGCCGGACCUGAGCUAUU- -5'
28325 3' -58.2 NC_005905.1 + 9055 0.71 0.384897
Target:  5'- aGUCCAGGUCGGCUUGGGCcaagcuagcuUCGAc-- -3'
miRNA:   3'- cCGGGUUCGGCCGGACCUG----------AGCUauu -5'
28325 3' -58.2 NC_005905.1 + 9116 1.08 0.000974
Target:  5'- uGGCCCAAGCCGGCCUGGACUCGAUAAa -3'
miRNA:   3'- -CCGGGUUCGGCCGGACCUGAGCUAUU- -5'
28325 3' -58.2 NC_005905.1 + 9161 0.95 0.008632
Target:  5'- uGGCCCAAGCCGaCCUGGACUCGGUAAa -3'
miRNA:   3'- -CCGGGUUCGGCcGGACCUGAGCUAUU- -5'
28325 3' -58.2 NC_005905.1 + 11098 0.7 0.438695
Target:  5'- aGUCCAGaCCGGCUUGGGCcaagcuagcuUCGAUAAa -3'
miRNA:   3'- cCGGGUUcGGCCGGACCUG----------AGCUAUU- -5'
28325 3' -58.2 NC_005905.1 + 11163 0.7 0.438695
Target:  5'- aGUCCAGaCCGGCUUGGGCcaagcuagcuUCGAUAAa -3'
miRNA:   3'- cCGGGUUcGGCCGGACCUG----------AGCUAUU- -5'
28325 3' -58.2 NC_005905.1 + 11204 0.96 0.007064
Target:  5'- uGGCCCAAGCCGGUCUGGACUCGGc-- -3'
miRNA:   3'- -CCGGGUUCGGCCGGACCUGAGCUauu -5'
28325 3' -58.2 NC_005905.1 + 11228 0.7 0.438695
Target:  5'- aGUCCAGaCCGGCUUGGGCcaagcuagcuUCGAUAAa -3'
miRNA:   3'- cCGGGUUcGGCCGGACCUG----------AGCUAUU- -5'
28325 3' -58.2 NC_005905.1 + 11269 0.96 0.007064
Target:  5'- uGGCCCAAGCCGGUCUGGACUCGGc-- -3'
miRNA:   3'- -CCGGGUUCGGCCGGACCUGAGCUauu -5'
28325 3' -58.2 NC_005905.1 + 11293 0.7 0.438695
Target:  5'- aGUCCAGaCCGGCUUGGGCcaagcuagcuUCGAUAAa -3'
miRNA:   3'- cCGGGUUcGGCCGGACCUG----------AGCUAUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.