miRNA display CGI


Results 1 - 20 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28325 3' -58.2 NC_005905.1 + 17714 0.9 0.018671
Target:  5'- uGGCCCAAGCCGGCCUaaACUCGAUAAa -3'
miRNA:   3'- -CCGGGUUCGGCCGGAccUGAGCUAUU- -5'
28325 3' -58.2 NC_005905.1 + 20086 1.01 0.00282
Target:  5'- uGGCCCAAGCCGGUCUGGACUCGAUAc -3'
miRNA:   3'- -CCGGGUUCGGCCGGACCUGAGCUAUu -5'
28325 3' -58.2 NC_005905.1 + 17144 1 0.003758
Target:  5'- cGGCCCAAGCCGGgCUGGACUCGAUAAa -3'
miRNA:   3'- -CCGGGUUCGGCCgGACCUGAGCUAUU- -5'
28325 3' -58.2 NC_005905.1 + 17669 0.99 0.004096
Target:  5'- uGGUCCAAGCCGGCCUGGAUUCGAUAAa -3'
miRNA:   3'- -CCGGGUUCGGCCGGACCUGAGCUAUU- -5'
28325 3' -58.2 NC_005905.1 + 19961 0.96 0.007269
Target:  5'- uGGCCCAAGCCGaCCUGGACUCGAUAAa -3'
miRNA:   3'- -CCGGGUUCGGCcGGACCUGAGCUAUU- -5'
28325 3' -58.2 NC_005905.1 + 21781 0.96 0.007481
Target:  5'- uGGCCCAAGCCGGCCUaGACUCGGUAAa -3'
miRNA:   3'- -CCGGGUUCGGCCGGAcCUGAGCUAUU- -5'
28325 3' -58.2 NC_005905.1 + 21826 0.96 0.007481
Target:  5'- uGGCCCAAGCCGGCCUaGACUCGGUAAa -3'
miRNA:   3'- -CCGGGUUCGGCCGGAcCUGAGCUAUU- -5'
28325 3' -58.2 NC_005905.1 + 21871 0.96 0.007481
Target:  5'- uGGCCCAAGCCGGCCUaGACUCGGUAAa -3'
miRNA:   3'- -CCGGGUUCGGCCGGAcCUGAGCUAUU- -5'
28325 3' -58.2 NC_005905.1 + 17034 0.95 0.008883
Target:  5'- cGGCUCAAGCCGGgCUGGACUCGAUAAa -3'
miRNA:   3'- -CCGGGUUCGGCCgGACCUGAGCUAUU- -5'
28325 3' -58.2 NC_005905.1 + 19917 1.03 0.002116
Target:  5'- uGGCCCAAGCCGGUCUGGACUCGAUAAa -3'
miRNA:   3'- -CCGGGUUCGGCCGGACCUGAGCUAUU- -5'
28325 3' -58.2 NC_005905.1 + 19742 1.03 0.002116
Target:  5'- uGGCCCAAGCCGGUCUGGACUCGAUAAa -3'
miRNA:   3'- -CCGGGUUCGGCCGGACCUGAGCUAUU- -5'
28325 3' -58.2 NC_005905.1 + 19522 1.03 0.002116
Target:  5'- uGGCCCAAGCCGGUCUGGACUCGAUAAa -3'
miRNA:   3'- -CCGGGUUCGGCCGGACCUGAGCUAUU- -5'
28325 3' -58.2 NC_005905.1 + 19632 1.08 0.000974
Target:  5'- uGGCCCAAGCCGGCCUGGACUCGAUAAa -3'
miRNA:   3'- -CCGGGUUCGGCCGGACCUGAGCUAUU- -5'
28325 3' -58.2 NC_005905.1 + 19677 1.08 0.000974
Target:  5'- uGGCCCAAGCCGGCCUGGACUCGAUAAa -3'
miRNA:   3'- -CCGGGUUCGGCCGGACCUGAGCUAUU- -5'
28325 3' -58.2 NC_005905.1 + 19787 1.08 0.000974
Target:  5'- uGGCCCAAGCCGGCCUGGACUCGAUAAa -3'
miRNA:   3'- -CCGGGUUCGGCCGGACCUGAGCUAUU- -5'
28325 3' -58.2 NC_005905.1 + 19852 1.08 0.000974
Target:  5'- uGGCCCAAGCCGGCCUGGACUCGAUAAa -3'
miRNA:   3'- -CCGGGUUCGGCCGGACCUGAGCUAUU- -5'
28325 3' -58.2 NC_005905.1 + 20026 1.08 0.000974
Target:  5'- uGGCCCAAGCCGGCCUGGACUCGAUAAa -3'
miRNA:   3'- -CCGGGUUCGGCCGGACCUGAGCUAUU- -5'
28325 3' -58.2 NC_005905.1 + 17539 1.03 0.002116
Target:  5'- uGGUCCAAGCCGGCCUGGACUCGAUAAa -3'
miRNA:   3'- -CCGGGUUCGGCCGGACCUGAGCUAUU- -5'
28325 3' -58.2 NC_005905.1 + 19412 1.03 0.002116
Target:  5'- uGGUCCAAGCCGGCCUGGACUCGAUAAa -3'
miRNA:   3'- -CCGGGUUCGGCCGGACCUGAGCUAUU- -5'
28325 3' -58.2 NC_005905.1 + 19477 1.03 0.002116
Target:  5'- uGGCCCAAGCCGGCUUGGACUCGAUAAa -3'
miRNA:   3'- -CCGGGUUCGGCCGGACCUGAGCUAUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.