Results 1 - 20 of 103 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28325 | 3' | -58.2 | NC_005905.1 | + | 17819 | 0.67 | 0.599452 |
Target: 5'- aGUUUAGGCCGGCUUGGGCcaagcuagcuUCGAc-- -3' miRNA: 3'- cCGGGUUCGGCCGGACCUG----------AGCUauu -5' |
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28325 | 3' | -58.2 | NC_005905.1 | + | 22181 | 0.8 | 0.090023 |
Target: 5'- aGCCCAGGCCGGCUUGGG-UCGAa-- -3' miRNA: 3'- cCGGGUUCGGCCGGACCUgAGCUauu -5' |
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28325 | 3' | -58.2 | NC_005905.1 | + | 9005 | 0.95 | 0.008389 |
Target: 5'- uGCCCAAGCCGGgCUGGACUCGAUAAa -3' miRNA: 3'- cCGGGUUCGGCCgGACCUGAGCUAUU- -5' |
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28325 | 3' | -58.2 | NC_005905.1 | + | 9116 | 1.08 | 0.000974 |
Target: 5'- uGGCCCAAGCCGGCCUGGACUCGAUAAa -3' miRNA: 3'- -CCGGGUUCGGCCGGACCUGAGCUAUU- -5' |
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28325 | 3' | -58.2 | NC_005905.1 | + | 21886 | 0.71 | 0.351541 |
Target: 5'- aGUCUAGGCCGGCUUGGGCcaaguuagcuUCGAc-- -3' miRNA: 3'- cCGGGUUCGGCCGGACCUG----------AGCUauu -5' |
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28325 | 3' | -58.2 | NC_005905.1 | + | 21931 | 0.71 | 0.351541 |
Target: 5'- aGUCUAGGCCGGCUUGGGCcaaguuagcuUCGAc-- -3' miRNA: 3'- cCGGGUUCGGCCGGACCUG----------AGCUauu -5' |
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28325 | 3' | -58.2 | NC_005905.1 | + | 17773 | 0.72 | 0.335649 |
Target: 5'- -aUCCAGGCCGGCUUGGACcaagcuagcuUCGAc-- -3' miRNA: 3'- ccGGGUUCGGCCGGACCUG----------AGCUauu -5' |
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28325 | 3' | -58.2 | NC_005905.1 | + | 17709 | 0.75 | 0.200326 |
Target: 5'- aGUCCAGGCCGGCUUGGGCcaagcuagcuUCGAc-- -3' miRNA: 3'- cCGGGUUCGGCCGGACCUG----------AGCUauu -5' |
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28325 | 3' | -58.2 | NC_005905.1 | + | 19892 | 0.75 | 0.200326 |
Target: 5'- aGUCCAGGCCGGCUUGGGCcaagcuagcuUCGAc-- -3' miRNA: 3'- cCGGGUUCGGCCGGACCUG----------AGCUauu -5' |
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28325 | 3' | -58.2 | NC_005905.1 | + | 17644 | 0.76 | 0.171486 |
Target: 5'- aGUCCAGGCCGGCUUGGACcaagcuagcuUCGAc-- -3' miRNA: 3'- cCGGGUUCGGCCGGACCUG----------AGCUauu -5' |
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28325 | 3' | -58.2 | NC_005905.1 | + | 20132 | 0.75 | 0.200326 |
Target: 5'- aGUCCAGGCCGGCUUGGGCcaagcuagcuUCGAc-- -3' miRNA: 3'- cCGGGUUCGGCCGGACCUG----------AGCUauu -5' |
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28325 | 3' | -58.2 | NC_005905.1 | + | 19782 | 0.75 | 0.200326 |
Target: 5'- aGUCCAGGCCGGCUUGGGCcaagcuagccUCGAc-- -3' miRNA: 3'- cCGGGUUCGGCCGGACCUG----------AGCUauu -5' |
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28325 | 3' | -58.2 | NC_005905.1 | + | 22111 | 0.67 | 0.588927 |
Target: 5'- aGUCUAGGCCGGUUUGGGCcaaguuagcuUCGAc-- -3' miRNA: 3'- cCGGGUUCGGCCGGACCUG----------AGCUauu -5' |
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28325 | 3' | -58.2 | NC_005905.1 | + | 19518 | 0.75 | 0.195242 |
Target: 5'- aGUCCAGGCCGGCUUGGACcaagcuagccUgGAUAAa -3' miRNA: 3'- cCGGGUUCGGCCGGACCUG----------AgCUAUU- -5' |
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28325 | 3' | -58.2 | NC_005905.1 | + | 17250 | 0.68 | 0.536948 |
Target: 5'- aGUCCAGcCCGGCUUGGGC-CGAg-- -3' miRNA: 3'- cCGGGUUcGGCCGGACCUGaGCUauu -5' |
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28325 | 3' | -58.2 | NC_005905.1 | + | 19737 | 0.75 | 0.200326 |
Target: 5'- aGUCCAGGCCGGCUUGGGCcaagcuagcuUCGAc-- -3' miRNA: 3'- cCGGGUUCGGCCGGACCUG----------AGCUauu -5' |
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28325 | 3' | -58.2 | NC_005905.1 | + | 19583 | 0.76 | 0.185412 |
Target: 5'- aGUCCAAGCCGGCUUGGGCcaagcuagcuUCGAc-- -3' miRNA: 3'- cCGGGUUCGGCCGGACCUG----------AGCUauu -5' |
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28325 | 3' | -58.2 | NC_005905.1 | + | 9161 | 0.95 | 0.008632 |
Target: 5'- uGGCCCAAGCCGaCCUGGACUCGGUAAa -3' miRNA: 3'- -CCGGGUUCGGCcGGACCUGAGCUAUU- -5' |
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28325 | 3' | -58.2 | NC_005905.1 | + | 20067 | 0.71 | 0.384897 |
Target: 5'- aGUCCAGGUCGGCUUGGGCcaagcuagcuUCGAc-- -3' miRNA: 3'- cCGGGUUCGGCCGGACCUG----------AGCUauu -5' |
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28325 | 3' | -58.2 | NC_005905.1 | + | 21976 | 0.71 | 0.351541 |
Target: 5'- aGUCUAGGCCGGCUUGGGCcaaguuagcuUCGAc-- -3' miRNA: 3'- cCGGGUUCGGCCGGACCUG----------AGCUauu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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