miRNA display CGI


Results 21 - 40 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28325 3' -58.2 NC_005905.1 + 17773 0.72 0.335649
Target:  5'- -aUCCAGGCCGGCUUGGACcaagcuagcuUCGAc-- -3'
miRNA:   3'- ccGGGUUCGGCCGGACCUG----------AGCUauu -5'
28325 3' -58.2 NC_005905.1 + 17824 0.72 0.320289
Target:  5'- uGGCCCAAaCCGGaCUGGACUUuAUAAa -3'
miRNA:   3'- -CCGGGUUcGGCCgGACCUGAGcUAUU- -5'
28325 3' -58.2 NC_005905.1 + 49345 0.74 0.233296
Target:  5'- cGGCUCAAGCCGGUCcaGAUUUGAUAAa -3'
miRNA:   3'- -CCGGGUUCGGCCGGacCUGAGCUAUU- -5'
28325 3' -58.2 NC_005905.1 + 8617 0.75 0.21084
Target:  5'- uGUCCAGGCCGGCUUGGGCcaagcuagcuUCGAc-- -3'
miRNA:   3'- cCGGGUUCGGCCGGACCUG----------AGCUauu -5'
28325 3' -58.2 NC_005905.1 + 17709 0.75 0.200326
Target:  5'- aGUCCAGGCCGGCUUGGGCcaagcuagcuUCGAc-- -3'
miRNA:   3'- cCGGGUUCGGCCGGACCUG----------AGCUauu -5'
28325 3' -58.2 NC_005905.1 + 19782 0.75 0.200326
Target:  5'- aGUCCAGGCCGGCUUGGGCcaagcuagccUCGAc-- -3'
miRNA:   3'- cCGGGUUCGGCCGGACCUG----------AGCUauu -5'
28325 3' -58.2 NC_005905.1 + 19892 0.75 0.200326
Target:  5'- aGUCCAGGCCGGCUUGGGCcaagcuagcuUCGAc-- -3'
miRNA:   3'- cCGGGUUCGGCCGGACCUG----------AGCUauu -5'
28325 3' -58.2 NC_005905.1 + 19957 0.75 0.200326
Target:  5'- aGUCCAGGCCGGCUUGGGCcaagcuagcuUCGAc-- -3'
miRNA:   3'- cCGGGUUCGGCCGGACCUG----------AGCUauu -5'
28325 3' -58.2 NC_005905.1 + 20132 0.75 0.200326
Target:  5'- aGUCCAGGCCGGCUUGGGCcaagcuagcuUCGAc-- -3'
miRNA:   3'- cCGGGUUCGGCCGGACCUG----------AGCUauu -5'
28325 3' -58.2 NC_005905.1 + 19737 0.75 0.200326
Target:  5'- aGUCCAGGCCGGCUUGGGCcaagcuagcuUCGAc-- -3'
miRNA:   3'- cCGGGUUCGGCCGGACCUG----------AGCUauu -5'
28325 3' -58.2 NC_005905.1 + 8836 0.75 0.200326
Target:  5'- aGUCCAGGCCGGCUUGGGCcaagcuagcuUCGAc-- -3'
miRNA:   3'- cCGGGUUCGGCCGGACCUG----------AGCUauu -5'
28325 3' -58.2 NC_005905.1 + 8791 0.75 0.200326
Target:  5'- aGUCCAGGCCGGCUUGGGCcaagcuagcuUCGAc-- -3'
miRNA:   3'- cCGGGUUCGGCCGGACCUG----------AGCUauu -5'
28325 3' -58.2 NC_005905.1 + 9010 0.75 0.200326
Target:  5'- aGUCCAGGCCGGCUUGGGCcaagcuagcuUCGAc-- -3'
miRNA:   3'- cCGGGUUCGGCCGGACCUG----------AGCUauu -5'
28325 3' -58.2 NC_005905.1 + 19518 0.75 0.195242
Target:  5'- aGUCCAGGCCGGCUUGGACcaagcuagccUgGAUAAa -3'
miRNA:   3'- cCGGGUUCGGCCGGACCUG----------AgCUAUU- -5'
28325 3' -58.2 NC_005905.1 + 19583 0.76 0.185412
Target:  5'- aGUCCAAGCCGGCUUGGGCcaagcuagcuUCGAc-- -3'
miRNA:   3'- cCGGGUUCGGCCGGACCUG----------AGCUauu -5'
28325 3' -58.2 NC_005905.1 + 17644 0.76 0.171486
Target:  5'- aGUCCAGGCCGGCUUGGACcaagcuagcuUCGAc-- -3'
miRNA:   3'- cCGGGUUCGGCCGGACCUG----------AGCUauu -5'
28325 3' -58.2 NC_005905.1 + 17429 0.78 0.142572
Target:  5'- uGGCCCAAGCCaaCCUGGuCUCGAUc- -3'
miRNA:   3'- -CCGGGUUCGGccGGACCuGAGCUAuu -5'
28325 3' -58.2 NC_005905.1 + 17319 0.78 0.142572
Target:  5'- uGGCCCAAGCCaaCCUGGuCUCGAUc- -3'
miRNA:   3'- -CCGGGUUCGGccGGACCuGAGCUAuu -5'
28325 3' -58.2 NC_005905.1 + 17099 0.78 0.142572
Target:  5'- uGGCCCAAGCCaaCCUGGuCUCGAUc- -3'
miRNA:   3'- -CCGGGUUCGGccGGACCuGAGCUAuu -5'
28325 3' -58.2 NC_005905.1 + 17209 0.78 0.142572
Target:  5'- uGGCCCAAGCCaaCCUGGuCUCGAUc- -3'
miRNA:   3'- -CCGGGUUCGGccGGACCuGAGCUAuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.