miRNA display CGI


Results 41 - 60 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28325 5' -59.4 NC_005905.1 + 9014 0.75 0.197071
Target:  5'- aGCUAaCUcuGCCCAAGCCGGgCUGGa -3'
miRNA:   3'- cCGAUcGAacCGGGUUCGGCCgGACC- -5'
28325 5' -59.4 NC_005905.1 + 9031 0.75 0.172097
Target:  5'- aGCUAGCUUcgacaaauuuuaccGaGUCCAGGUCGGCUUGGg -3'
miRNA:   3'- cCGAUCGAA--------------C-CGGGUUCGGCCGGACC- -5'
28325 5' -59.4 NC_005905.1 + 21997 0.77 0.144593
Target:  5'- aGCUAaCUUGGCCCAAaCCGGCCUa- -3'
miRNA:   3'- cCGAUcGAACCGGGUUcGGCCGGAcc -5'
28325 5' -59.4 NC_005905.1 + 21683 0.77 0.14085
Target:  5'- aGCUAaCUUGGCCaAAGCCGGCCUa- -3'
miRNA:   3'- cCGAUcGAACCGGgUUCGGCCGGAcc -5'
28325 5' -59.4 NC_005905.1 + 49111 0.78 0.110961
Target:  5'- aGGCUcGgUUGGCUCAAGCCGGUCUa- -3'
miRNA:   3'- -CCGAuCgAACCGGGUUCGGCCGGAcc -5'
28325 5' -59.4 NC_005905.1 + 49021 0.78 0.110961
Target:  5'- aGGCUcGgUUGGCUCAAGCCGGUCUa- -3'
miRNA:   3'- -CCGAuCgAACCGGGUUCGGCCGGAcc -5'
28325 5' -59.4 NC_005905.1 + 48976 0.78 0.110961
Target:  5'- aGGCUcGgUUGGCUCAAGCCGGUCUa- -3'
miRNA:   3'- -CCGAuCgAACCGGGUUCGGCCGGAcc -5'
28325 5' -59.4 NC_005905.1 + 49156 0.78 0.110961
Target:  5'- aGGCUcGgUUGGCUCAAGCCGGUCUa- -3'
miRNA:   3'- -CCGAuCgAACCGGGUUCGGCCGGAcc -5'
28325 5' -59.4 NC_005905.1 + 21728 0.78 0.108032
Target:  5'- aGCUAaCUUGGUUCAAGCCGGCCUa- -3'
miRNA:   3'- cCGAUcGAACCGGGUUCGGCCGGAcc -5'
28325 5' -59.4 NC_005905.1 + 8812 0.8 0.084076
Target:  5'- aGCUAGCUUcgacaaauuuuaccGaGUCCAGGCCGGCUUGGg -3'
miRNA:   3'- cCGAUCGAA--------------C-CGGGUUCGGCCGGACC- -5'
28325 5' -59.4 NC_005905.1 + 19513 0.8 0.082494
Target:  5'- aGGCcGGCUUGGaCCAAGCUaGCCUGGa -3'
miRNA:   3'- -CCGaUCGAACCgGGUUCGGcCGGACC- -5'
28325 5' -59.4 NC_005905.1 + 19606 0.81 0.075822
Target:  5'- aGCUAGCUUcacaaauuuuaucGaGUCCAAGCCGGCUUGGg -3'
miRNA:   3'- cCGAUCGAA-------------C-CGGGUUCGGCCGGACC- -5'
28325 5' -59.4 NC_005905.1 + 17136 0.82 0.064526
Target:  5'- aGCUAaCUcGGCCCAAGCCGGgCUGGa -3'
miRNA:   3'- cCGAUcGAaCCGGGUUCGGCCgGACC- -5'
28325 5' -59.4 NC_005905.1 + 21953 0.82 0.06278
Target:  5'- aGCUA-CUUGGCUCAAGCCGGCCUa- -3'
miRNA:   3'- cCGAUcGAACCGGGUUCGGCCGGAcc -5'
28325 5' -59.4 NC_005905.1 + 19559 0.85 0.036103
Target:  5'- aGCUAGCUUGGCCCAAGaCGaCCUGGa -3'
miRNA:   3'- cCGAUCGAACCGGGUUCgGCcGGACC- -5'
28325 5' -59.4 NC_005905.1 + 17816 0.86 0.032294
Target:  5'- aGCUAGCUUGGCCCAAaCCGGaCUGGa -3'
miRNA:   3'- cCGAUCGAACCGGGUUcGGCCgGACC- -5'
28325 5' -59.4 NC_005905.1 + 21773 0.88 0.023744
Target:  5'- aGCUAaCUUGGCCCAAGCCGGCCUa- -3'
miRNA:   3'- cCGAUcGAACCGGGUUCGGCCGGAcc -5'
28325 5' -59.4 NC_005905.1 + 21818 0.88 0.023744
Target:  5'- aGCUAaCUUGGCCCAAGCCGGCCUa- -3'
miRNA:   3'- cCGAUcGAACCGGGUUCGGCCGGAcc -5'
28325 5' -59.4 NC_005905.1 + 21863 0.88 0.023744
Target:  5'- aGCUAaCUUGGCCCAAGCCGGCCUa- -3'
miRNA:   3'- cCGAUcGAACCGGGUUCGGCCGGAcc -5'
28325 5' -59.4 NC_005905.1 + 19954 0.88 0.021225
Target:  5'- aGCUAGC-UGGCCCAAGCCGaCCUGGa -3'
miRNA:   3'- cCGAUCGaACCGGGUUCGGCcGGACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.