miRNA display CGI


Results 21 - 40 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28325 5' -59.4 NC_005905.1 + 8922 0.71 0.349385
Target:  5'- aGUUAGCUUcgacaaauuuuaccGaGUCCAGGCCGGCUUGa -3'
miRNA:   3'- cCGAUCGAA--------------C-CGGGUUCGGCCGGACc -5'
28325 5' -59.4 NC_005905.1 + 17027 0.71 0.343865
Target:  5'- -aCUAaCUcGGCUCAAGCCGGgCUGGa -3'
miRNA:   3'- ccGAUcGAaCCGGGUUCGGCCgGACC- -5'
28325 5' -59.4 NC_005905.1 + 17530 0.71 0.328441
Target:  5'- aGGUUGGCUUGGgCCAAGCUaGCUUc- -3'
miRNA:   3'- -CCGAUCGAACCgGGUUCGGcCGGAcc -5'
28325 5' -59.4 NC_005905.1 + 17420 0.71 0.328441
Target:  5'- aGGUUGGCUUGGgCCAAGCUaGCUUc- -3'
miRNA:   3'- -CCGAUCGAACCgGGUUCGGcCGGAcc -5'
28325 5' -59.4 NC_005905.1 + 17310 0.71 0.328441
Target:  5'- aGGUUGGCUUGGgCCAAGCUaGCUUc- -3'
miRNA:   3'- -CCGAUCGAACCgGGUUCGGcCGGAcc -5'
28325 5' -59.4 NC_005905.1 + 17200 0.71 0.328441
Target:  5'- aGGUUGGCUUGGgCCAAGCUaGCUUc- -3'
miRNA:   3'- -CCGAUCGAACCgGGUUCGGcCGGAcc -5'
28325 5' -59.4 NC_005905.1 + 49066 0.71 0.313535
Target:  5'- aGGCUcGgUcGGCUCAAGCCGGUCUa- -3'
miRNA:   3'- -CCGAuCgAaCCGGGUUCGGCCGGAcc -5'
28325 5' -59.4 NC_005905.1 + 49201 0.71 0.313535
Target:  5'- aGGCUcGgUcGGCUCAAGCCGGUCUa- -3'
miRNA:   3'- -CCGAuCgAaCCGGGUUCGGCCGGAcc -5'
28325 5' -59.4 NC_005905.1 + 49246 0.71 0.313535
Target:  5'- aGGCUcGgUcGGCUCAAGCCGGUCUa- -3'
miRNA:   3'- -CCGAuCgAaCCGGGUUCGGCCGGAcc -5'
28325 5' -59.4 NC_005905.1 + 49291 0.71 0.313535
Target:  5'- aGGCUcGgUcGGCUCAAGCCGGUCUa- -3'
miRNA:   3'- -CCGAuCgAaCCGGGUUCGGCCGGAcc -5'
28325 5' -59.4 NC_005905.1 + 21910 0.72 0.283238
Target:  5'- aGUUAGCUUcgacgaguuuuaccGaGUCUAGGCCGGCUUGGg -3'
miRNA:   3'- cCGAUCGAA--------------C-CGGGUUCGGCCGGACC- -5'
28325 5' -59.4 NC_005905.1 + 22000 0.72 0.283238
Target:  5'- aGUUAGCUUcgacgaguuuuaccGaGUCUAGGCCGGCUUGGg -3'
miRNA:   3'- cCGAUCGAA--------------C-CGGGUUCGGCCGGACC- -5'
28325 5' -59.4 NC_005905.1 + 21955 0.72 0.283238
Target:  5'- aGUUAGCUUcgacgaguuuuaccGaGUCUAGGCCGGCUUGGg -3'
miRNA:   3'- cCGAUCGAA--------------C-CGGGUUCGGCCGGACC- -5'
28325 5' -59.4 NC_005905.1 + 17356 0.73 0.259063
Target:  5'- aGCUAaCUcGGCCUAAGCCGGgCUGa -3'
miRNA:   3'- cCGAUcGAaCCGGGUUCGGCCgGACc -5'
28325 5' -59.4 NC_005905.1 + 17466 0.73 0.259063
Target:  5'- aGCUAaCUcGGCCUAAGCCGGgCUGa -3'
miRNA:   3'- cCGAUcGAaCCGGGUUCGGCCgGACc -5'
28325 5' -59.4 NC_005905.1 + 17246 0.73 0.259063
Target:  5'- aGCUAaCUcGGCCUAAGCCGGgCUGa -3'
miRNA:   3'- cCGAUcGAaCCGGGUUCGGCCgGACc -5'
28325 5' -59.4 NC_005905.1 + 19761 0.73 0.244902
Target:  5'- aGCUAGCcUcgacaaauuuuaucGaGUCCAGGCCGGCUUGGg -3'
miRNA:   3'- cCGAUCGaA--------------C-CGGGUUCGGCCGGACC- -5'
28325 5' -59.4 NC_005905.1 + 8581 0.74 0.221809
Target:  5'- cGGCUuggaccgauuuAGCUUcgacaaauuuuaccGuGUCCAGGCCGGCUUGGg -3'
miRNA:   3'- -CCGA-----------UCGAA--------------C-CGGGUUCGGCCGGACC- -5'
28325 5' -59.4 NC_005905.1 + 17798 0.74 0.204177
Target:  5'- aGCUAGCUUcGacaaauuuuaucgaaUCCAGGCCGGCUUGGa -3'
miRNA:   3'- cCGAUCGAAcC---------------GGGUUCGGCCGGACC- -5'
28325 5' -59.4 NC_005905.1 + 22050 0.75 0.199079
Target:  5'- uGGCcaaAGCa-GGCCUcgacucauucgacccAAGCCGGCCUGGg -3'
miRNA:   3'- -CCGa--UCGaaCCGGG---------------UUCGGCCGGACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.