Results 21 - 40 of 99 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28325 | 5' | -59.4 | NC_005905.1 | + | 17531 | 1.04 | 0.00167 |
Target: 5'- aGCUAGCUUGGUCCAAGCCGGCCUGGa -3' miRNA: 3'- cCGAUCGAACCGGGUUCGGCCGGACC- -5' |
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28325 | 5' | -59.4 | NC_005905.1 | + | 17661 | 1.04 | 0.00167 |
Target: 5'- aGCUAGCUUGGUCCAAGCCGGCCUGGa -3' miRNA: 3'- cCGAUCGAACCGGGUUCGGCCGGACC- -5' |
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28325 | 5' | -59.4 | NC_005905.1 | + | 19469 | 1.04 | 0.00167 |
Target: 5'- aGCUAGCUUGGCCCAAGCCGGCUUGGa -3' miRNA: 3'- cCGAUCGAACCGGGUUCGGCCGGACC- -5' |
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28325 | 5' | -59.4 | NC_005905.1 | + | 19514 | 1.04 | 0.00167 |
Target: 5'- aGCUAGCUUGGCCCAAGCCGGUCUGGa -3' miRNA: 3'- cCGAUCGAACCGGGUUCGGCCGGACC- -5' |
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28325 | 5' | -59.4 | NC_005905.1 | + | 19909 | 1.04 | 0.00167 |
Target: 5'- aGCUAGCUUGGCCCAAGCCGGUCUGGa -3' miRNA: 3'- cCGAUCGAACCGGGUUCGGCCGGACC- -5' |
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28325 | 5' | -59.4 | NC_005905.1 | + | 11731 | 1.04 | 0.00167 |
Target: 5'- aGCUAGCUUGGCCCAAGCCGGUCUGGa -3' miRNA: 3'- cCGAUCGAACCGGGUUCGGCCGGACC- -5' |
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28325 | 5' | -59.4 | NC_005905.1 | + | 11796 | 1.04 | 0.00167 |
Target: 5'- aGCUAGCUUGGCCCAAGCCGGUCUGGa -3' miRNA: 3'- cCGAUCGAACCGGGUUCGGCCGGACC- -5' |
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28325 | 5' | -59.4 | NC_005905.1 | + | 11212 | 1.04 | 0.00167 |
Target: 5'- aGCUAGCUUGGCCCAAGCCGGUCUGGa -3' miRNA: 3'- cCGAUCGAACCGGGUUCGGCCGGACC- -5' |
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28325 | 5' | -59.4 | NC_005905.1 | + | 11602 | 1.04 | 0.00167 |
Target: 5'- aGCUAGCUUGGCCCAAGCCGGUCUGGa -3' miRNA: 3'- cCGAUCGAACCGGGUUCGGCCGGACC- -5' |
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28325 | 5' | -59.4 | NC_005905.1 | + | 9059 | 1.03 | 0.001818 |
Target: 5'- aGCUAGCUUGGCUCAAGCCGGCCUGGa -3' miRNA: 3'- cCGAUCGAACCGGGUUCGGCCGGACC- -5' |
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28325 | 5' | -59.4 | NC_005905.1 | + | 8795 | 1 | 0.003203 |
Target: 5'- aGCUAGCUUGGCCCAAGCCGGgCUGGa -3' miRNA: 3'- cCGAUCGAACCGGGUUCGGCCgGACC- -5' |
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28325 | 5' | -59.4 | NC_005905.1 | + | 8840 | 0.99 | 0.00339 |
Target: 5'- aGCUAGCUUGGCCCAAGCCGGUUUGGa -3' miRNA: 3'- cCGAUCGAACCGGGUUCGGCCGGACC- -5' |
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28325 | 5' | -59.4 | NC_005905.1 | + | 17706 | 0.99 | 0.003691 |
Target: 5'- aGCUAGCUUGGCCCAAGCCGGCCUa- -3' miRNA: 3'- cCGAUCGAACCGGGUUCGGCCGGAcc -5' |
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28325 | 5' | -59.4 | NC_005905.1 | + | 9169 | 0.96 | 0.005642 |
Target: 5'- aGCUAGCUUGGCCCAAGCCGaCCUGGa -3' miRNA: 3'- cCGAUCGAACCGGGUUCGGCcGGACC- -5' |
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28325 | 5' | -59.4 | NC_005905.1 | + | 19734 | 0.92 | 0.010803 |
Target: 5'- aGCUAaCUUGGCCCAAGCCGGUCUGGa -3' miRNA: 3'- cCGAUcGAACCGGGUUCGGCCGGACC- -5' |
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28325 | 5' | -59.4 | NC_005905.1 | + | 17091 | 0.89 | 0.017934 |
Target: 5'- aGCUAGCUUGGCCCAAGCCaaCCUGGu -3' miRNA: 3'- cCGAUCGAACCGGGUUCGGccGGACC- -5' |
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28325 | 5' | -59.4 | NC_005905.1 | + | 17201 | 0.89 | 0.017934 |
Target: 5'- aGCUAGCUUGGCCCAAGCCaaCCUGGu -3' miRNA: 3'- cCGAUCGAACCGGGUUCGGccGGACC- -5' |
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28325 | 5' | -59.4 | NC_005905.1 | + | 17311 | 0.89 | 0.017934 |
Target: 5'- aGCUAGCUUGGCCCAAGCCaaCCUGGu -3' miRNA: 3'- cCGAUCGAACCGGGUUCGGccGGACC- -5' |
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28325 | 5' | -59.4 | NC_005905.1 | + | 17421 | 0.89 | 0.017934 |
Target: 5'- aGCUAGCUUGGCCCAAGCCaaCCUGGu -3' miRNA: 3'- cCGAUCGAACCGGGUUCGGccGGACC- -5' |
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28325 | 5' | -59.4 | NC_005905.1 | + | 19954 | 0.88 | 0.021225 |
Target: 5'- aGCUAGC-UGGCCCAAGCCGaCCUGGa -3' miRNA: 3'- cCGAUCGaACCGGGUUCGGCcGGACC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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