Results 21 - 40 of 99 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28325 | 5' | -59.4 | NC_005905.1 | + | 11472 | 1.04 | 0.00167 |
Target: 5'- aGCUAGCUUGGCCCAAGCCGGUCUGGa -3' miRNA: 3'- cCGAUCGAACCGGGUUCGGCCGGACC- -5' |
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28325 | 5' | -59.4 | NC_005905.1 | + | 11537 | 1.04 | 0.00167 |
Target: 5'- aGCUAGCUUGGCCCAAGCCGGUCUGGa -3' miRNA: 3'- cCGAUCGAACCGGGUUCGGCCGGACC- -5' |
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28325 | 5' | -59.4 | NC_005905.1 | + | 11602 | 1.04 | 0.00167 |
Target: 5'- aGCUAGCUUGGCCCAAGCCGGUCUGGa -3' miRNA: 3'- cCGAUCGAACCGGGUUCGGCCGGACC- -5' |
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28325 | 5' | -59.4 | NC_005905.1 | + | 11666 | 1.04 | 0.00167 |
Target: 5'- aGCUAGCUUGGCCCAAGCCGGUCUGGa -3' miRNA: 3'- cCGAUCGAACCGGGUUCGGCCGGACC- -5' |
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28325 | 5' | -59.4 | NC_005905.1 | + | 11731 | 1.04 | 0.00167 |
Target: 5'- aGCUAGCUUGGCCCAAGCCGGUCUGGa -3' miRNA: 3'- cCGAUCGAACCGGGUUCGGCCGGACC- -5' |
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28325 | 5' | -59.4 | NC_005905.1 | + | 11796 | 1.04 | 0.00167 |
Target: 5'- aGCUAGCUUGGCCCAAGCCGGUCUGGa -3' miRNA: 3'- cCGAUCGAACCGGGUUCGGCCGGACC- -5' |
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28325 | 5' | -59.4 | NC_005905.1 | + | 11861 | 1.04 | 0.00167 |
Target: 5'- aGCUAGCUUGGCCCAAGCCGGUCUGGa -3' miRNA: 3'- cCGAUCGAACCGGGUUCGGCCGGACC- -5' |
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28325 | 5' | -59.4 | NC_005905.1 | + | 11926 | 1.04 | 0.00167 |
Target: 5'- aGCUAGCUUGGCCCAAGCCGGUCUGGa -3' miRNA: 3'- cCGAUCGAACCGGGUUCGGCCGGACC- -5' |
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28325 | 5' | -59.4 | NC_005905.1 | + | 17027 | 0.71 | 0.343865 |
Target: 5'- -aCUAaCUcGGCUCAAGCCGGgCUGGa -3' miRNA: 3'- ccGAUcGAaCCGGGUUCGGCCgGACC- -5' |
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28325 | 5' | -59.4 | NC_005905.1 | + | 17091 | 0.89 | 0.017934 |
Target: 5'- aGCUAGCUUGGCCCAAGCCaaCCUGGu -3' miRNA: 3'- cCGAUCGAACCGGGUUCGGccGGACC- -5' |
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28325 | 5' | -59.4 | NC_005905.1 | + | 17136 | 0.82 | 0.064526 |
Target: 5'- aGCUAaCUcGGCCCAAGCCGGgCUGGa -3' miRNA: 3'- cCGAUcGAaCCGGGUUCGGCCgGACC- -5' |
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28325 | 5' | -59.4 | NC_005905.1 | + | 17200 | 0.71 | 0.328441 |
Target: 5'- aGGUUGGCUUGGgCCAAGCUaGCUUc- -3' miRNA: 3'- -CCGAUCGAACCgGGUUCGGcCGGAcc -5' |
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28325 | 5' | -59.4 | NC_005905.1 | + | 17201 | 0.89 | 0.017934 |
Target: 5'- aGCUAGCUUGGCCCAAGCCaaCCUGGu -3' miRNA: 3'- cCGAUCGAACCGGGUUCGGccGGACC- -5' |
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28325 | 5' | -59.4 | NC_005905.1 | + | 17246 | 0.73 | 0.259063 |
Target: 5'- aGCUAaCUcGGCCUAAGCCGGgCUGa -3' miRNA: 3'- cCGAUcGAaCCGGGUUCGGCCgGACc -5' |
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28325 | 5' | -59.4 | NC_005905.1 | + | 17310 | 0.71 | 0.328441 |
Target: 5'- aGGUUGGCUUGGgCCAAGCUaGCUUc- -3' miRNA: 3'- -CCGAUCGAACCgGGUUCGGcCGGAcc -5' |
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28325 | 5' | -59.4 | NC_005905.1 | + | 17311 | 0.89 | 0.017934 |
Target: 5'- aGCUAGCUUGGCCCAAGCCaaCCUGGu -3' miRNA: 3'- cCGAUCGAACCGGGUUCGGccGGACC- -5' |
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28325 | 5' | -59.4 | NC_005905.1 | + | 17356 | 0.73 | 0.259063 |
Target: 5'- aGCUAaCUcGGCCUAAGCCGGgCUGa -3' miRNA: 3'- cCGAUcGAaCCGGGUUCGGCCgGACc -5' |
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28325 | 5' | -59.4 | NC_005905.1 | + | 17420 | 0.71 | 0.328441 |
Target: 5'- aGGUUGGCUUGGgCCAAGCUaGCUUc- -3' miRNA: 3'- -CCGAUCGAACCgGGUUCGGcCGGAcc -5' |
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28325 | 5' | -59.4 | NC_005905.1 | + | 17421 | 0.89 | 0.017934 |
Target: 5'- aGCUAGCUUGGCCCAAGCCaaCCUGGu -3' miRNA: 3'- cCGAUCGAACCGGGUUCGGccGGACC- -5' |
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28325 | 5' | -59.4 | NC_005905.1 | + | 17466 | 0.73 | 0.259063 |
Target: 5'- aGCUAaCUcGGCCUAAGCCGGgCUGa -3' miRNA: 3'- cCGAUcGAaCCGGGUUCGGCCgGACc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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