miRNA display CGI


Results 1 - 20 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28325 5' -59.4 NC_005905.1 + 8581 0.74 0.221809
Target:  5'- cGGCUuggaccgauuuAGCUUcgacaaauuuuaccGuGUCCAGGCCGGCUUGGg -3'
miRNA:   3'- -CCGA-----------UCGAA--------------C-CGGGUUCGGCCGGACC- -5'
28325 5' -59.4 NC_005905.1 + 8703 0.69 0.407986
Target:  5'- aGCUAGCUUcgacaaauuuuaccGaGUCCAAaCCGGCUUGGg -3'
miRNA:   3'- cCGAUCGAA--------------C-CGGGUUcGGCCGGACC- -5'
28325 5' -59.4 NC_005905.1 + 8730 1.08 0.000777
Target:  5'- aGCUAGCUUGGCCCAAGCCGGCCUGGa -3'
miRNA:   3'- cCGAUCGAACCGGGUUCGGCCGGACC- -5'
28325 5' -59.4 NC_005905.1 + 8781 0.69 0.437662
Target:  5'- aGGUUuaucgaGUCCAGGCCGGCUUGGg -3'
miRNA:   3'- -CCGAucgaacCGGGUUCGGCCGGACC- -5'
28325 5' -59.4 NC_005905.1 + 8795 1 0.003203
Target:  5'- aGCUAGCUUGGCCCAAGCCGGgCUGGa -3'
miRNA:   3'- cCGAUCGAACCGGGUUCGGCCgGACC- -5'
28325 5' -59.4 NC_005905.1 + 8812 0.8 0.084076
Target:  5'- aGCUAGCUUcgacaaauuuuaccGaGUCCAGGCCGGCUUGGg -3'
miRNA:   3'- cCGAUCGAA--------------C-CGGGUUCGGCCGGACC- -5'
28325 5' -59.4 NC_005905.1 + 8840 0.99 0.00339
Target:  5'- aGCUAGCUUGGCCCAAGCCGGUUUGGa -3'
miRNA:   3'- cCGAUCGAACCGGGUUCGGCCGGACC- -5'
28325 5' -59.4 NC_005905.1 + 8904 1.08 0.000777
Target:  5'- aGCUAGCUUGGCCCAAGCCGGCCUGGa -3'
miRNA:   3'- cCGAUCGAACCGGGUUCGGCCGGACC- -5'
28325 5' -59.4 NC_005905.1 + 8922 0.71 0.349385
Target:  5'- aGUUAGCUUcgacaaauuuuaccGaGUCCAGGCCGGCUUGa -3'
miRNA:   3'- cCGAUCGAA--------------C-CGGGUUCGGCCGGACc -5'
28325 5' -59.4 NC_005905.1 + 8949 1.08 0.000777
Target:  5'- aGCUAGCUUGGCCCAAGCCGGCCUGGa -3'
miRNA:   3'- cCGAUCGAACCGGGUUCGGCCGGACC- -5'
28325 5' -59.4 NC_005905.1 + 9000 0.69 0.437662
Target:  5'- aGGUUuaucgaGUCCAGGCCGGCUUGGg -3'
miRNA:   3'- -CCGAucgaacCGGGUUCGGCCGGACC- -5'
28325 5' -59.4 NC_005905.1 + 9014 0.75 0.197071
Target:  5'- aGCUAaCUcuGCCCAAGCCGGgCUGGa -3'
miRNA:   3'- cCGAUcGAacCGGGUUCGGCCgGACC- -5'
28325 5' -59.4 NC_005905.1 + 9031 0.75 0.172097
Target:  5'- aGCUAGCUUcgacaaauuuuaccGaGUCCAGGUCGGCUUGGg -3'
miRNA:   3'- cCGAUCGAA--------------C-CGGGUUCGGCCGGACC- -5'
28325 5' -59.4 NC_005905.1 + 9059 1.03 0.001818
Target:  5'- aGCUAGCUUGGCUCAAGCCGGCCUGGa -3'
miRNA:   3'- cCGAUCGAACCGGGUUCGGCCGGACC- -5'
28325 5' -59.4 NC_005905.1 + 9124 1.08 0.000777
Target:  5'- aGCUAGCUUGGCCCAAGCCGGCCUGGa -3'
miRNA:   3'- cCGAUCGAACCGGGUUCGGCCGGACC- -5'
28325 5' -59.4 NC_005905.1 + 9169 0.96 0.005642
Target:  5'- aGCUAGCUUGGCCCAAGCCGaCCUGGa -3'
miRNA:   3'- cCGAUCGAACCGGGUUCGGCcGGACC- -5'
28325 5' -59.4 NC_005905.1 + 11212 1.04 0.00167
Target:  5'- aGCUAGCUUGGCCCAAGCCGGUCUGGa -3'
miRNA:   3'- cCGAUCGAACCGGGUUCGGCCGGACC- -5'
28325 5' -59.4 NC_005905.1 + 11277 1.04 0.00167
Target:  5'- aGCUAGCUUGGCCCAAGCCGGUCUGGa -3'
miRNA:   3'- cCGAUCGAACCGGGUUCGGCCGGACC- -5'
28325 5' -59.4 NC_005905.1 + 11342 1.04 0.00167
Target:  5'- aGCUAGCUUGGCCCAAGCCGGUCUGGa -3'
miRNA:   3'- cCGAUCGAACCGGGUUCGGCCGGACC- -5'
28325 5' -59.4 NC_005905.1 + 11407 1.04 0.00167
Target:  5'- aGCUAGCUUGGCCCAAGCCGGUCUGGa -3'
miRNA:   3'- cCGAUCGAACCGGGUUCGGCCGGACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.