miRNA display CGI


Results 1 - 20 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28325 5' -59.4 NC_005905.1 + 21773 0.88 0.023744
Target:  5'- aGCUAaCUUGGCCCAAGCCGGCCUa- -3'
miRNA:   3'- cCGAUcGAACCGGGUUCGGCCGGAcc -5'
28325 5' -59.4 NC_005905.1 + 19909 1.04 0.00167
Target:  5'- aGCUAGCUUGGCCCAAGCCGGUCUGGa -3'
miRNA:   3'- cCGAUCGAACCGGGUUCGGCCGGACC- -5'
28325 5' -59.4 NC_005905.1 + 17706 0.99 0.003691
Target:  5'- aGCUAGCUUGGCCCAAGCCGGCCUa- -3'
miRNA:   3'- cCGAUCGAACCGGGUUCGGCCGGAcc -5'
28325 5' -59.4 NC_005905.1 + 19734 0.92 0.010803
Target:  5'- aGCUAaCUUGGCCCAAGCCGGUCUGGa -3'
miRNA:   3'- cCGAUcGAACCGGGUUCGGCCGGACC- -5'
28325 5' -59.4 NC_005905.1 + 17091 0.89 0.017934
Target:  5'- aGCUAGCUUGGCCCAAGCCaaCCUGGu -3'
miRNA:   3'- cCGAUCGAACCGGGUUCGGccGGACC- -5'
28325 5' -59.4 NC_005905.1 + 17201 0.89 0.017934
Target:  5'- aGCUAGCUUGGCCCAAGCCaaCCUGGu -3'
miRNA:   3'- cCGAUCGAACCGGGUUCGGccGGACC- -5'
28325 5' -59.4 NC_005905.1 + 17311 0.89 0.017934
Target:  5'- aGCUAGCUUGGCCCAAGCCaaCCUGGu -3'
miRNA:   3'- cCGAUCGAACCGGGUUCGGccGGACC- -5'
28325 5' -59.4 NC_005905.1 + 17421 0.89 0.017934
Target:  5'- aGCUAGCUUGGCCCAAGCCaaCCUGGu -3'
miRNA:   3'- cCGAUCGAACCGGGUUCGGccGGACC- -5'
28325 5' -59.4 NC_005905.1 + 19954 0.88 0.021225
Target:  5'- aGCUAGC-UGGCCCAAGCCGaCCUGGa -3'
miRNA:   3'- cCGAUCGaACCGGGUUCGGCcGGACC- -5'
28325 5' -59.4 NC_005905.1 + 19514 1.04 0.00167
Target:  5'- aGCUAGCUUGGCCCAAGCCGGUCUGGa -3'
miRNA:   3'- cCGAUCGAACCGGGUUCGGCCGGACC- -5'
28325 5' -59.4 NC_005905.1 + 19469 1.04 0.00167
Target:  5'- aGCUAGCUUGGCCCAAGCCGGCUUGGa -3'
miRNA:   3'- cCGAUCGAACCGGGUUCGGCCGGACC- -5'
28325 5' -59.4 NC_005905.1 + 17661 1.04 0.00167
Target:  5'- aGCUAGCUUGGUCCAAGCCGGCCUGGa -3'
miRNA:   3'- cCGAUCGAACCGGGUUCGGCCGGACC- -5'
28325 5' -59.4 NC_005905.1 + 17596 1.08 0.000777
Target:  5'- aGCUAGCUUGGCCCAAGCCGGCCUGGa -3'
miRNA:   3'- cCGAUCGAACCGGGUUCGGCCGGACC- -5'
28325 5' -59.4 NC_005905.1 + 19624 1.08 0.000777
Target:  5'- aGCUAGCUUGGCCCAAGCCGGCCUGGa -3'
miRNA:   3'- cCGAUCGAACCGGGUUCGGCCGGACC- -5'
28325 5' -59.4 NC_005905.1 + 19779 1.08 0.000777
Target:  5'- aGCUAGCUUGGCCCAAGCCGGCCUGGa -3'
miRNA:   3'- cCGAUCGAACCGGGUUCGGCCGGACC- -5'
28325 5' -59.4 NC_005905.1 + 19844 1.08 0.000777
Target:  5'- aGCUAGCUUGGCCCAAGCCGGCCUGGa -3'
miRNA:   3'- cCGAUCGAACCGGGUUCGGCCGGACC- -5'
28325 5' -59.4 NC_005905.1 + 20018 1.08 0.000777
Target:  5'- aGCUAGCUUGGCCCAAGCCGGCCUGGa -3'
miRNA:   3'- cCGAUCGAACCGGGUUCGGCCGGACC- -5'
28325 5' -59.4 NC_005905.1 + 19403 1.08 0.000822
Target:  5'- aGGCUAGCUUGGUCCAAGCCGGCCUGGa -3'
miRNA:   3'- -CCGAUCGAACCGGGUUCGGCCGGACC- -5'
28325 5' -59.4 NC_005905.1 + 20077 1.08 0.000822
Target:  5'- aGGCUAGCUUGGCCCAAGCCGGUCUGGa -3'
miRNA:   3'- -CCGAUCGAACCGGGUUCGGCCGGACC- -5'
28325 5' -59.4 NC_005905.1 + 17531 1.04 0.00167
Target:  5'- aGCUAGCUUGGUCCAAGCCGGCCUGGa -3'
miRNA:   3'- cCGAUCGAACCGGGUUCGGCCGGACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.