Results 1 - 20 of 99 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28325 | 5' | -59.4 | NC_005905.1 | + | 21865 | 0.67 | 0.561865 |
Target: 5'- aGUUAGCUUcgacgaguuuuaccGaGUCUAGGCCGGCUUGa -3' miRNA: 3'- cCGAUCGAA--------------C-CGGGUUCGGCCGGACc -5' |
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28325 | 5' | -59.4 | NC_005905.1 | + | 21910 | 0.72 | 0.283238 |
Target: 5'- aGUUAGCUUcgacgaguuuuaccGaGUCUAGGCCGGCUUGGg -3' miRNA: 3'- cCGAUCGAA--------------C-CGGGUUCGGCCGGACC- -5' |
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28325 | 5' | -59.4 | NC_005905.1 | + | 22000 | 0.72 | 0.283238 |
Target: 5'- aGUUAGCUUcgacgaguuuuaccGaGUCUAGGCCGGCUUGGg -3' miRNA: 3'- cCGAUCGAA--------------C-CGGGUUCGGCCGGACC- -5' |
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28325 | 5' | -59.4 | NC_005905.1 | + | 9124 | 1.08 | 0.000777 |
Target: 5'- aGCUAGCUUGGCCCAAGCCGGCCUGGa -3' miRNA: 3'- cCGAUCGAACCGGGUUCGGCCGGACC- -5' |
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28325 | 5' | -59.4 | NC_005905.1 | + | 17654 | 0.69 | 0.456239 |
Target: 5'- aGGUUuaucgaGUCCAGGCCGGCUUGGa -3' miRNA: 3'- -CCGAucgaacCGGGUUCGGCCGGACC- -5' |
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28325 | 5' | -59.4 | NC_005905.1 | + | 17719 | 0.69 | 0.437662 |
Target: 5'- aGGUUuaucgaGUCCAGGCCGGCUUGGg -3' miRNA: 3'- -CCGAucgaacCGGGUUCGGCCGGACC- -5' |
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28325 | 5' | -59.4 | NC_005905.1 | + | 19902 | 0.69 | 0.437662 |
Target: 5'- aGGUUuaucgaGUCCAGGCCGGCUUGGg -3' miRNA: 3'- -CCGAucgaacCGGGUUCGGCCGGACC- -5' |
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28325 | 5' | -59.4 | NC_005905.1 | + | 19967 | 0.69 | 0.437662 |
Target: 5'- aGGUUuaucgaGUCCAGGCCGGCUUGGg -3' miRNA: 3'- -CCGAucgaacCGGGUUCGGCCGGACC- -5' |
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28325 | 5' | -59.4 | NC_005905.1 | + | 19871 | 0.69 | 0.434913 |
Target: 5'- aGCUAGCUUcgacaaauuuuaucGaGUCCAGaCCGGCUUGGg -3' miRNA: 3'- cCGAUCGAA--------------C-CGGGUUcGGCCGGACC- -5' |
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28325 | 5' | -59.4 | NC_005905.1 | + | 17530 | 0.71 | 0.328441 |
Target: 5'- aGGUUGGCUUGGgCCAAGCUaGCUUc- -3' miRNA: 3'- -CCGAUCGAACCgGGUUCGGcCGGAcc -5' |
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28325 | 5' | -59.4 | NC_005905.1 | + | 17200 | 0.71 | 0.328441 |
Target: 5'- aGGUUGGCUUGGgCCAAGCUaGCUUc- -3' miRNA: 3'- -CCGAUCGAACCgGGUUCGGcCGGAcc -5' |
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28325 | 5' | -59.4 | NC_005905.1 | + | 19651 | 0.69 | 0.434913 |
Target: 5'- aGCUAGCUUcgacaaauuuuaucGaGUCCAGaCCGGCUUGGg -3' miRNA: 3'- cCGAUCGAA--------------C-CGGGUUcGGCCGGACC- -5' |
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28325 | 5' | -59.4 | NC_005905.1 | + | 17843 | 0.68 | 0.501479 |
Target: 5'- aGUUAGCUUcgacaaauuuuaucGaGUUUAGGCCGGCUUGGg -3' miRNA: 3'- cCGAUCGAA--------------C-CGGGUUCGGCCGGACC- -5' |
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28325 | 5' | -59.4 | NC_005905.1 | + | 17310 | 0.71 | 0.328441 |
Target: 5'- aGGUUGGCUUGGgCCAAGCUaGCUUc- -3' miRNA: 3'- -CCGAUCGAACCgGGUUCGGcCGGAcc -5' |
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28325 | 5' | -59.4 | NC_005905.1 | + | 22135 | 0.68 | 0.491681 |
Target: 5'- aGUUAGCUUcgacaaauuuuaucGaGUCUAGGCCGGUUUGGg -3' miRNA: 3'- cCGAUCGAA--------------C-CGGGUUCGGCCGGACC- -5' |
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28325 | 5' | -59.4 | NC_005905.1 | + | 20142 | 0.69 | 0.437662 |
Target: 5'- aGGUUuaucgaGUCCAGGCCGGCUUGGg -3' miRNA: 3'- -CCGAucgaacCGGGUUCGGCCGGACC- -5' |
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28325 | 5' | -59.4 | NC_005905.1 | + | 17420 | 0.71 | 0.328441 |
Target: 5'- aGGUUGGCUUGGgCCAAGCUaGCUUc- -3' miRNA: 3'- -CCGAUCGAACCgGGUUCGGcCGGAcc -5' |
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28325 | 5' | -59.4 | NC_005905.1 | + | 21955 | 0.72 | 0.283238 |
Target: 5'- aGUUAGCUUcgacgaguuuuaccGaGUCUAGGCCGGCUUGGg -3' miRNA: 3'- cCGAUCGAA--------------C-CGGGUUCGGCCGGACC- -5' |
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28325 | 5' | -59.4 | NC_005905.1 | + | 22181 | 0.69 | 0.456239 |
Target: 5'- ---------aGCCCAGGCCGGCUUGGg -3' miRNA: 3'- ccgaucgaacCGGGUUCGGCCGGACC- -5' |
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28325 | 5' | -59.4 | NC_005905.1 | + | 19792 | 0.69 | 0.437662 |
Target: 5'- aGGUUuaucgaGUCCAGGCCGGCUUGGg -3' miRNA: 3'- -CCGAucgaacCGGGUUCGGCCGGACC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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