Results 1 - 20 of 99 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28325 | 5' | -59.4 | NC_005905.1 | + | 19668 | 1.12 | 0.000382 |
Target: 5'- aGGCUAGCUUGGCCCAAGCCGGCCUGGa -3' miRNA: 3'- -CCGAUCGAACCGGGUUCGGCCGGACC- -5' |
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28325 | 5' | -59.4 | NC_005905.1 | + | 9124 | 1.08 | 0.000777 |
Target: 5'- aGCUAGCUUGGCCCAAGCCGGCCUGGa -3' miRNA: 3'- cCGAUCGAACCGGGUUCGGCCGGACC- -5' |
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28325 | 5' | -59.4 | NC_005905.1 | + | 8730 | 1.08 | 0.000777 |
Target: 5'- aGCUAGCUUGGCCCAAGCCGGCCUGGa -3' miRNA: 3'- cCGAUCGAACCGGGUUCGGCCGGACC- -5' |
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28325 | 5' | -59.4 | NC_005905.1 | + | 8904 | 1.08 | 0.000777 |
Target: 5'- aGCUAGCUUGGCCCAAGCCGGCCUGGa -3' miRNA: 3'- cCGAUCGAACCGGGUUCGGCCGGACC- -5' |
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28325 | 5' | -59.4 | NC_005905.1 | + | 8949 | 1.08 | 0.000777 |
Target: 5'- aGCUAGCUUGGCCCAAGCCGGCCUGGa -3' miRNA: 3'- cCGAUCGAACCGGGUUCGGCCGGACC- -5' |
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28325 | 5' | -59.4 | NC_005905.1 | + | 20018 | 1.08 | 0.000777 |
Target: 5'- aGCUAGCUUGGCCCAAGCCGGCCUGGa -3' miRNA: 3'- cCGAUCGAACCGGGUUCGGCCGGACC- -5' |
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28325 | 5' | -59.4 | NC_005905.1 | + | 19844 | 1.08 | 0.000777 |
Target: 5'- aGCUAGCUUGGCCCAAGCCGGCCUGGa -3' miRNA: 3'- cCGAUCGAACCGGGUUCGGCCGGACC- -5' |
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28325 | 5' | -59.4 | NC_005905.1 | + | 19779 | 1.08 | 0.000777 |
Target: 5'- aGCUAGCUUGGCCCAAGCCGGCCUGGa -3' miRNA: 3'- cCGAUCGAACCGGGUUCGGCCGGACC- -5' |
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28325 | 5' | -59.4 | NC_005905.1 | + | 19624 | 1.08 | 0.000777 |
Target: 5'- aGCUAGCUUGGCCCAAGCCGGCCUGGa -3' miRNA: 3'- cCGAUCGAACCGGGUUCGGCCGGACC- -5' |
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28325 | 5' | -59.4 | NC_005905.1 | + | 17596 | 1.08 | 0.000777 |
Target: 5'- aGCUAGCUUGGCCCAAGCCGGCCUGGa -3' miRNA: 3'- cCGAUCGAACCGGGUUCGGCCGGACC- -5' |
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28325 | 5' | -59.4 | NC_005905.1 | + | 19403 | 1.08 | 0.000822 |
Target: 5'- aGGCUAGCUUGGUCCAAGCCGGCCUGGa -3' miRNA: 3'- -CCGAUCGAACCGGGUUCGGCCGGACC- -5' |
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28325 | 5' | -59.4 | NC_005905.1 | + | 20077 | 1.08 | 0.000822 |
Target: 5'- aGGCUAGCUUGGCCCAAGCCGGUCUGGa -3' miRNA: 3'- -CCGAUCGAACCGGGUUCGGCCGGACC- -5' |
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28325 | 5' | -59.4 | NC_005905.1 | + | 11537 | 1.04 | 0.00167 |
Target: 5'- aGCUAGCUUGGCCCAAGCCGGUCUGGa -3' miRNA: 3'- cCGAUCGAACCGGGUUCGGCCGGACC- -5' |
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28325 | 5' | -59.4 | NC_005905.1 | + | 11277 | 1.04 | 0.00167 |
Target: 5'- aGCUAGCUUGGCCCAAGCCGGUCUGGa -3' miRNA: 3'- cCGAUCGAACCGGGUUCGGCCGGACC- -5' |
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28325 | 5' | -59.4 | NC_005905.1 | + | 11212 | 1.04 | 0.00167 |
Target: 5'- aGCUAGCUUGGCCCAAGCCGGUCUGGa -3' miRNA: 3'- cCGAUCGAACCGGGUUCGGCCGGACC- -5' |
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28325 | 5' | -59.4 | NC_005905.1 | + | 11472 | 1.04 | 0.00167 |
Target: 5'- aGCUAGCUUGGCCCAAGCCGGUCUGGa -3' miRNA: 3'- cCGAUCGAACCGGGUUCGGCCGGACC- -5' |
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28325 | 5' | -59.4 | NC_005905.1 | + | 19909 | 1.04 | 0.00167 |
Target: 5'- aGCUAGCUUGGCCCAAGCCGGUCUGGa -3' miRNA: 3'- cCGAUCGAACCGGGUUCGGCCGGACC- -5' |
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28325 | 5' | -59.4 | NC_005905.1 | + | 19514 | 1.04 | 0.00167 |
Target: 5'- aGCUAGCUUGGCCCAAGCCGGUCUGGa -3' miRNA: 3'- cCGAUCGAACCGGGUUCGGCCGGACC- -5' |
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28325 | 5' | -59.4 | NC_005905.1 | + | 19469 | 1.04 | 0.00167 |
Target: 5'- aGCUAGCUUGGCCCAAGCCGGCUUGGa -3' miRNA: 3'- cCGAUCGAACCGGGUUCGGCCGGACC- -5' |
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28325 | 5' | -59.4 | NC_005905.1 | + | 17531 | 1.04 | 0.00167 |
Target: 5'- aGCUAGCUUGGUCCAAGCCGGCCUGGa -3' miRNA: 3'- cCGAUCGAACCGGGUUCGGCCGGACC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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