miRNA display CGI


Results 1 - 20 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28325 5' -59.4 NC_005905.1 + 49336 0.68 0.494611
Target:  5'- aGGCUcGgUcGGCUCAAGCCGGUCc-- -3'
miRNA:   3'- -CCGAuCgAaCCGGGUUCGGCCGGacc -5'
28325 5' -59.4 NC_005905.1 + 49291 0.71 0.313535
Target:  5'- aGGCUcGgUcGGCUCAAGCCGGUCUa- -3'
miRNA:   3'- -CCGAuCgAaCCGGGUUCGGCCGGAcc -5'
28325 5' -59.4 NC_005905.1 + 49246 0.71 0.313535
Target:  5'- aGGCUcGgUcGGCUCAAGCCGGUCUa- -3'
miRNA:   3'- -CCGAuCgAaCCGGGUUCGGCCGGAcc -5'
28325 5' -59.4 NC_005905.1 + 49201 0.71 0.313535
Target:  5'- aGGCUcGgUcGGCUCAAGCCGGUCUa- -3'
miRNA:   3'- -CCGAuCgAaCCGGGUUCGGCCGGAcc -5'
28325 5' -59.4 NC_005905.1 + 49156 0.78 0.110961
Target:  5'- aGGCUcGgUUGGCUCAAGCCGGUCUa- -3'
miRNA:   3'- -CCGAuCgAACCGGGUUCGGCCGGAcc -5'
28325 5' -59.4 NC_005905.1 + 49111 0.78 0.110961
Target:  5'- aGGCUcGgUUGGCUCAAGCCGGUCUa- -3'
miRNA:   3'- -CCGAuCgAACCGGGUUCGGCCGGAcc -5'
28325 5' -59.4 NC_005905.1 + 49066 0.71 0.313535
Target:  5'- aGGCUcGgUcGGCUCAAGCCGGUCUa- -3'
miRNA:   3'- -CCGAuCgAaCCGGGUUCGGCCGGAcc -5'
28325 5' -59.4 NC_005905.1 + 49021 0.78 0.110961
Target:  5'- aGGCUcGgUUGGCUCAAGCCGGUCUa- -3'
miRNA:   3'- -CCGAuCgAACCGGGUUCGGCCGGAcc -5'
28325 5' -59.4 NC_005905.1 + 48976 0.78 0.110961
Target:  5'- aGGCUcGgUUGGCUCAAGCCGGUCUa- -3'
miRNA:   3'- -CCGAuCgAACCGGGUUCGGCCGGAcc -5'
28325 5' -59.4 NC_005905.1 + 48932 0.67 0.534387
Target:  5'- aGCUcGgUcGGCUCAAGCCGGUCUa- -3'
miRNA:   3'- cCGAuCgAaCCGGGUUCGGCCGGAcc -5'
28325 5' -59.4 NC_005905.1 + 22181 0.69 0.456239
Target:  5'- ---------aGCCCAGGCCGGCUUGGg -3'
miRNA:   3'- ccgaucgaacCGGGUUCGGCCGGACC- -5'
28325 5' -59.4 NC_005905.1 + 22135 0.68 0.491681
Target:  5'- aGUUAGCUUcgacaaauuuuaucGaGUCUAGGCCGGUUUGGg -3'
miRNA:   3'- cCGAUCGAA--------------C-CGGGUUCGGCCGGACC- -5'
28325 5' -59.4 NC_005905.1 + 22050 0.75 0.199079
Target:  5'- uGGCcaaAGCa-GGCCUcgacucauucgacccAAGCCGGCCUGGg -3'
miRNA:   3'- -CCGa--UCGaaCCGGG---------------UUCGGCCGGACC- -5'
28325 5' -59.4 NC_005905.1 + 22000 0.72 0.283238
Target:  5'- aGUUAGCUUcgacgaguuuuaccGaGUCUAGGCCGGCUUGGg -3'
miRNA:   3'- cCGAUCGAA--------------C-CGGGUUCGGCCGGACC- -5'
28325 5' -59.4 NC_005905.1 + 21997 0.77 0.144593
Target:  5'- aGCUAaCUUGGCCCAAaCCGGCCUa- -3'
miRNA:   3'- cCGAUcGAACCGGGUUcGGCCGGAcc -5'
28325 5' -59.4 NC_005905.1 + 21955 0.72 0.283238
Target:  5'- aGUUAGCUUcgacgaguuuuaccGaGUCUAGGCCGGCUUGGg -3'
miRNA:   3'- cCGAUCGAA--------------C-CGGGUUCGGCCGGACC- -5'
28325 5' -59.4 NC_005905.1 + 21953 0.82 0.06278
Target:  5'- aGCUA-CUUGGCUCAAGCCGGCCUa- -3'
miRNA:   3'- cCGAUcGAACCGGGUUCGGCCGGAcc -5'
28325 5' -59.4 NC_005905.1 + 21910 0.72 0.283238
Target:  5'- aGUUAGCUUcgacgaguuuuaccGaGUCUAGGCCGGCUUGGg -3'
miRNA:   3'- cCGAUCGAA--------------C-CGGGUUCGGCCGGACC- -5'
28325 5' -59.4 NC_005905.1 + 21865 0.67 0.561865
Target:  5'- aGUUAGCUUcgacgaguuuuaccGaGUCUAGGCCGGCUUGa -3'
miRNA:   3'- cCGAUCGAA--------------C-CGGGUUCGGCCGGACc -5'
28325 5' -59.4 NC_005905.1 + 21863 0.88 0.023744
Target:  5'- aGCUAaCUUGGCCCAAGCCGGCCUa- -3'
miRNA:   3'- cCGAUcGAACCGGGUUCGGCCGGAcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.