Results 41 - 60 of 88 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28326 | 3' | -50.7 | NC_005905.1 | + | 17724 | 0.71 | 0.801719 |
Target: 5'- -aGAUUaGGUUuaucgagucCAGGCCGGCUUGGGCc -3' miRNA: 3'- gaUUGAaCCAA---------GUUCGGCCGGAUCUG- -5' |
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28326 | 3' | -50.7 | NC_005905.1 | + | 17797 | 0.67 | 0.95032 |
Target: 5'- gCUAGCUUcGacaaauuuuaucgaaUcCAGGCCGGCUUGGACc -3' miRNA: 3'- -GAUUGAAcC---------------AaGUUCGGCCGGAUCUG- -5' |
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28326 | 3' | -50.7 | NC_005905.1 | + | 17817 | 0.7 | 0.839032 |
Target: 5'- gCUAGCUUGGccCAAaCCGGaCUGGACu -3' miRNA: 3'- -GAUUGAACCaaGUUcGGCCgGAUCUG- -5' |
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28326 | 3' | -50.7 | NC_005905.1 | + | 17841 | 0.73 | 0.683034 |
Target: 5'- uUAGCUUcgacaaauuuuaucGaGUUUAGGCCGGCUUGGGCc -3' miRNA: 3'- gAUUGAA--------------C-CAAGUUCGGCCGGAUCUG- -5' |
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28326 | 3' | -50.7 | NC_005905.1 | + | 17979 | 0.74 | 0.597428 |
Target: 5'- -gAACUcGGUUUAAGCCGGCCa---- -3' miRNA: 3'- gaUUGAaCCAAGUUCGGCCGGaucug -5' |
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28326 | 3' | -50.7 | NC_005905.1 | + | 19405 | 1.01 | 0.01511 |
Target: 5'- gCUAGCUUGGUcCAAGCCGGCCUGGACu -3' miRNA: 3'- -GAUUGAACCAaGUUCGGCCGGAUCUG- -5' |
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28326 | 3' | -50.7 | NC_005905.1 | + | 19470 | 0.9 | 0.073049 |
Target: 5'- gCUAGCUUGGccCAAGCCGGCUUGGACu -3' miRNA: 3'- -GAUUGAACCaaGUUCGGCCGGAUCUG- -5' |
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28326 | 3' | -50.7 | NC_005905.1 | + | 19509 | 0.74 | 0.619672 |
Target: 5'- -cGGCUUGGacCAAGCUaGCCUGGAUa -3' miRNA: 3'- gaUUGAACCaaGUUCGGcCGGAUCUG- -5' |
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28326 | 3' | -50.7 | NC_005905.1 | + | 19515 | 0.9 | 0.073049 |
Target: 5'- gCUAGCUUGGccCAAGCCGGUCUGGACu -3' miRNA: 3'- -GAUUGAACCaaGUUCGGCCGGAUCUG- -5' |
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28326 | 3' | -50.7 | NC_005905.1 | + | 19560 | 0.69 | 0.872787 |
Target: 5'- gCUAGCUUGGccCAAGaCGaCCUGGACu -3' miRNA: 3'- -GAUUGAACCaaGUUCgGCcGGAUCUG- -5' |
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28326 | 3' | -50.7 | NC_005905.1 | + | 19605 | 0.72 | 0.739466 |
Target: 5'- gCUAGCUUcacaaauuuuaucGaGUcCAAGCCGGCUUGGGCc -3' miRNA: 3'- -GAUUGAA-------------C-CAaGUUCGGCCGGAUCUG- -5' |
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28326 | 3' | -50.7 | NC_005905.1 | + | 19625 | 0.96 | 0.032919 |
Target: 5'- gCUAGCUUGGccCAAGCCGGCCUGGACu -3' miRNA: 3'- -GAUUGAACCaaGUUCGGCCGGAUCUG- -5' |
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28326 | 3' | -50.7 | NC_005905.1 | + | 19670 | 0.96 | 0.032919 |
Target: 5'- gCUAGCUUGGccCAAGCCGGCCUGGACu -3' miRNA: 3'- -GAUUGAACCaaGUUCGGCCGGAUCUG- -5' |
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28326 | 3' | -50.7 | NC_005905.1 | + | 19735 | 0.9 | 0.073049 |
Target: 5'- gCUAACUUGGccCAAGCCGGUCUGGACu -3' miRNA: 3'- -GAUUGAACCaaGUUCGGCCGGAUCUG- -5' |
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28326 | 3' | -50.7 | NC_005905.1 | + | 19739 | 0.66 | 0.957202 |
Target: 5'- ------cGaGUcCAGGCCGGCUUGGGCc -3' miRNA: 3'- gauugaaC-CAaGUUCGGCCGGAUCUG- -5' |
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28326 | 3' | -50.7 | NC_005905.1 | + | 19780 | 0.96 | 0.032919 |
Target: 5'- gCUAGCUUGGccCAAGCCGGCCUGGACu -3' miRNA: 3'- -GAUUGAACCaaGUUCGGCCGGAUCUG- -5' |
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28326 | 3' | -50.7 | NC_005905.1 | + | 19797 | 0.71 | 0.801719 |
Target: 5'- -aGAUUaGGUUuaucgagucCAGGCCGGCUUGGGCc -3' miRNA: 3'- gaUUGAaCCAA---------GUUCGGCCGGAUCUG- -5' |
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28326 | 3' | -50.7 | NC_005905.1 | + | 19845 | 0.96 | 0.032919 |
Target: 5'- gCUAGCUUGGccCAAGCCGGCCUGGACu -3' miRNA: 3'- -GAUUGAACCaaGUUCGGCCGGAUCUG- -5' |
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28326 | 3' | -50.7 | NC_005905.1 | + | 19907 | 0.71 | 0.801719 |
Target: 5'- -aGAUUaGGUUuaucgagucCAGGCCGGCUUGGGCc -3' miRNA: 3'- gaUUGAaCCAA---------GUUCGGCCGGAUCUG- -5' |
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28326 | 3' | -50.7 | NC_005905.1 | + | 19910 | 0.9 | 0.073049 |
Target: 5'- gCUAGCUUGGccCAAGCCGGUCUGGACu -3' miRNA: 3'- -GAUUGAACCaaGUUCGGCCGGAUCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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