miRNA display CGI


Results 21 - 40 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28326 3' -50.7 NC_005905.1 + 11601 0.9 0.073049
Target:  5'- gCUAGCUUGGccCAAGCCGGUCUGGACu -3'
miRNA:   3'- -GAUUGAACCaaGUUCGGCCGGAUCUG- -5'
28326 3' -50.7 NC_005905.1 + 11665 0.9 0.073049
Target:  5'- gCUAGCUUGGccCAAGCCGGUCUGGACu -3'
miRNA:   3'- -GAUUGAACCaaGUUCGGCCGGAUCUG- -5'
28326 3' -50.7 NC_005905.1 + 11730 0.9 0.073049
Target:  5'- gCUAGCUUGGccCAAGCCGGUCUGGACu -3'
miRNA:   3'- -GAUUGAACCaaGUUCGGCCGGAUCUG- -5'
28326 3' -50.7 NC_005905.1 + 11795 0.9 0.073049
Target:  5'- gCUAGCUUGGccCAAGCCGGUCUGGACu -3'
miRNA:   3'- -GAUUGAACCaaGUUCGGCCGGAUCUG- -5'
28326 3' -50.7 NC_005905.1 + 11860 0.9 0.073049
Target:  5'- gCUAGCUUGGccCAAGCCGGUCUGGACu -3'
miRNA:   3'- -GAUUGAACCaaGUUCGGCCGGAUCUG- -5'
28326 3' -50.7 NC_005905.1 + 11925 0.9 0.073049
Target:  5'- gCUAGCUUGGccCAAGCCGGUCUGGACu -3'
miRNA:   3'- -GAUUGAACCaaGUUCGGCCGGAUCUG- -5'
28326 3' -50.7 NC_005905.1 + 17027 0.84 0.186301
Target:  5'- aCUAACUcGGcUCAAGCCGGgCUGGACu -3'
miRNA:   3'- -GAUUGAaCCaAGUUCGGCCgGAUCUG- -5'
28326 3' -50.7 NC_005905.1 + 17092 0.66 0.952982
Target:  5'- gCUAGCUUGGccCAAGCCaaCCUGGuCu -3'
miRNA:   3'- -GAUUGAACCaaGUUCGGccGGAUCuG- -5'
28326 3' -50.7 NC_005905.1 + 17137 0.78 0.409855
Target:  5'- gCUAACUcGGccCAAGCCGGgCUGGACu -3'
miRNA:   3'- -GAUUGAaCCaaGUUCGGCCgGAUCUG- -5'
28326 3' -50.7 NC_005905.1 + 17202 0.66 0.952982
Target:  5'- gCUAGCUUGGccCAAGCCaaCCUGGuCu -3'
miRNA:   3'- -GAUUGAACCaaGUUCGGccGGAUCuG- -5'
28326 3' -50.7 NC_005905.1 + 17307 0.67 0.943723
Target:  5'- uUGGCUUGGgcCAAGCUaGCUUcGACa -3'
miRNA:   3'- gAUUGAACCaaGUUCGGcCGGAuCUG- -5'
28326 3' -50.7 NC_005905.1 + 17312 0.66 0.952982
Target:  5'- gCUAGCUUGGccCAAGCCaaCCUGGuCu -3'
miRNA:   3'- -GAUUGAACCaaGUUCGGccGGAUCuG- -5'
28326 3' -50.7 NC_005905.1 + 17417 0.67 0.943723
Target:  5'- uUGGCUUGGgcCAAGCUaGCUUcGACa -3'
miRNA:   3'- gAUUGAACCaaGUUCGGcCGGAuCUG- -5'
28326 3' -50.7 NC_005905.1 + 17422 0.66 0.952982
Target:  5'- gCUAGCUUGGccCAAGCCaaCCUGGuCu -3'
miRNA:   3'- -GAUUGAACCaaGUUCGGccGGAUCuG- -5'
28326 3' -50.7 NC_005905.1 + 17527 0.67 0.943723
Target:  5'- uUGGCUUGGgcCAAGCUaGCUUcGACa -3'
miRNA:   3'- gAUUGAACCaaGUUCGGcCGGAuCUG- -5'
28326 3' -50.7 NC_005905.1 + 17532 1.01 0.01511
Target:  5'- gCUAGCUUGGUcCAAGCCGGCCUGGACu -3'
miRNA:   3'- -GAUUGAACCAaGUUCGGCCGGAUCUG- -5'
28326 3' -50.7 NC_005905.1 + 17597 0.96 0.032919
Target:  5'- gCUAGCUUGGccCAAGCCGGCCUGGACu -3'
miRNA:   3'- -GAUUGAACCaaGUUCGGCCGGAUCUG- -5'
28326 3' -50.7 NC_005905.1 + 17659 0.72 0.740528
Target:  5'- -aGAUUaGGUUuaucgagucCAGGCCGGCUUGGACc -3'
miRNA:   3'- gaUUGAaCCAA---------GUUCGGCCGGAUCUG- -5'
28326 3' -50.7 NC_005905.1 + 17662 0.97 0.026713
Target:  5'- gCUAGCUUGGUcCAAGCCGGCCUGGAUu -3'
miRNA:   3'- -GAUUGAACCAaGUUCGGCCGGAUCUG- -5'
28326 3' -50.7 NC_005905.1 + 17707 0.84 0.181279
Target:  5'- gCUAGCUUGGccCAAGCCGGCCUAaACu -3'
miRNA:   3'- -GAUUGAACCaaGUUCGGCCGGAUcUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.