miRNA display CGI


Results 21 - 40 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28326 3' -50.7 NC_005905.1 + 11536 0.9 0.073049
Target:  5'- gCUAGCUUGGccCAAGCCGGUCUGGACu -3'
miRNA:   3'- -GAUUGAACCaaGUUCGGCCGGAUCUG- -5'
28326 3' -50.7 NC_005905.1 + 11601 0.9 0.073049
Target:  5'- gCUAGCUUGGccCAAGCCGGUCUGGACu -3'
miRNA:   3'- -GAUUGAACCaaGUUCGGCCGGAUCUG- -5'
28326 3' -50.7 NC_005905.1 + 11471 0.9 0.073049
Target:  5'- gCUAGCUUGGccCAAGCCGGUCUGGACu -3'
miRNA:   3'- -GAUUGAACCaaGUUCGGCCGGAUCUG- -5'
28326 3' -50.7 NC_005905.1 + 11406 0.9 0.073049
Target:  5'- gCUAGCUUGGccCAAGCCGGUCUGGACu -3'
miRNA:   3'- -GAUUGAACCaaGUUCGGCCGGAUCUG- -5'
28326 3' -50.7 NC_005905.1 + 11341 0.9 0.073049
Target:  5'- gCUAGCUUGGccCAAGCCGGUCUGGACu -3'
miRNA:   3'- -GAUUGAACCaaGUUCGGCCGGAUCUG- -5'
28326 3' -50.7 NC_005905.1 + 11211 0.9 0.073049
Target:  5'- gCUAGCUUGGccCAAGCCGGUCUGGACu -3'
miRNA:   3'- -GAUUGAACCaaGUUCGGCCGGAUCUG- -5'
28326 3' -50.7 NC_005905.1 + 11276 0.9 0.073049
Target:  5'- gCUAGCUUGGccCAAGCCGGUCUGGACu -3'
miRNA:   3'- -GAUUGAACCaaGUUCGGCCGGAUCUG- -5'
28326 3' -50.7 NC_005905.1 + 11860 0.9 0.073049
Target:  5'- gCUAGCUUGGccCAAGCCGGUCUGGACu -3'
miRNA:   3'- -GAUUGAACCaaGUUCGGCCGGAUCUG- -5'
28326 3' -50.7 NC_005905.1 + 11795 0.9 0.073049
Target:  5'- gCUAGCUUGGccCAAGCCGGUCUGGACu -3'
miRNA:   3'- -GAUUGAACCaaGUUCGGCCGGAUCUG- -5'
28326 3' -50.7 NC_005905.1 + 11925 0.9 0.073049
Target:  5'- gCUAGCUUGGccCAAGCCGGUCUGGACu -3'
miRNA:   3'- -GAUUGAACCaaGUUCGGCCGGAUCUG- -5'
28326 3' -50.7 NC_005905.1 + 19470 0.9 0.073049
Target:  5'- gCUAGCUUGGccCAAGCCGGCUUGGACu -3'
miRNA:   3'- -GAUUGAACCaaGUUCGGCCGGAUCUG- -5'
28326 3' -50.7 NC_005905.1 + 19515 0.9 0.073049
Target:  5'- gCUAGCUUGGccCAAGCCGGUCUGGACu -3'
miRNA:   3'- -GAUUGAACCaaGUUCGGCCGGAUCUG- -5'
28326 3' -50.7 NC_005905.1 + 19735 0.9 0.073049
Target:  5'- gCUAACUUGGccCAAGCCGGUCUGGACu -3'
miRNA:   3'- -GAUUGAACCaaGUUCGGCCGGAUCUG- -5'
28326 3' -50.7 NC_005905.1 + 19910 0.9 0.073049
Target:  5'- gCUAGCUUGGccCAAGCCGGUCUGGACu -3'
miRNA:   3'- -GAUUGAACCaaGUUCGGCCGGAUCUG- -5'
28326 3' -50.7 NC_005905.1 + 20079 0.9 0.073049
Target:  5'- gCUAGCUUGGccCAAGCCGGUCUGGACu -3'
miRNA:   3'- -GAUUGAACCaaGUUCGGCCGGAUCUG- -5'
28326 3' -50.7 NC_005905.1 + 8794 0.86 0.141248
Target:  5'- gCUAGCUUGGccCAAGCCGGgCUGGACu -3'
miRNA:   3'- -GAUUGAACCaaGUUCGGCCgGAUCUG- -5'
28326 3' -50.7 NC_005905.1 + 8839 0.85 0.149378
Target:  5'- gCUAGCUUGGccCAAGCCGGUUUGGACu -3'
miRNA:   3'- -GAUUGAACCaaGUUCGGCCGGAUCUG- -5'
28326 3' -50.7 NC_005905.1 + 17707 0.84 0.181279
Target:  5'- gCUAGCUUGGccCAAGCCGGCCUAaACu -3'
miRNA:   3'- -GAUUGAACCaaGUUCGGCCGGAUcUG- -5'
28326 3' -50.7 NC_005905.1 + 17027 0.84 0.186301
Target:  5'- aCUAACUcGGcUCAAGCCGGgCUGGACu -3'
miRNA:   3'- -GAUUGAaCCaAGUUCGGCCgGAUCUG- -5'
28326 3' -50.7 NC_005905.1 + 21998 0.83 0.202108
Target:  5'- gCUAACUUGGccCAAaCCGGCCUAGACu -3'
miRNA:   3'- -GAUUGAACCaaGUUcGGCCGGAUCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.