miRNA display CGI


Results 1 - 20 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28326 3' -50.7 NC_005905.1 + 21729 1.1 0.003659
Target:  5'- gCUAACUUGGUUCAAGCCGGCCUAGACu -3'
miRNA:   3'- -GAUUGAACCAAGUUCGGCCGGAUCUG- -5'
28326 3' -50.7 NC_005905.1 + 9058 1.01 0.014228
Target:  5'- gCUAGCUUGGcUCAAGCCGGCCUGGACu -3'
miRNA:   3'- -GAUUGAACCaAGUUCGGCCGGAUCUG- -5'
28326 3' -50.7 NC_005905.1 + 19405 1.01 0.01511
Target:  5'- gCUAGCUUGGUcCAAGCCGGCCUGGACu -3'
miRNA:   3'- -GAUUGAACCAaGUUCGGCCGGAUCUG- -5'
28326 3' -50.7 NC_005905.1 + 17532 1.01 0.01511
Target:  5'- gCUAGCUUGGUcCAAGCCGGCCUGGACu -3'
miRNA:   3'- -GAUUGAACCAaGUUCGGCCGGAUCUG- -5'
28326 3' -50.7 NC_005905.1 + 17662 0.97 0.026713
Target:  5'- gCUAGCUUGGUcCAAGCCGGCCUGGAUu -3'
miRNA:   3'- -GAUUGAACCAaGUUCGGCCGGAUCUG- -5'
28326 3' -50.7 NC_005905.1 + 8729 0.97 0.028358
Target:  5'- gCUAGCUUGGccCAAGCCGGCCUGGACa -3'
miRNA:   3'- -GAUUGAACCaaGUUCGGCCGGAUCUG- -5'
28326 3' -50.7 NC_005905.1 + 21774 0.96 0.030103
Target:  5'- gCUAACUUGGccCAAGCCGGCCUAGACu -3'
miRNA:   3'- -GAUUGAACCaaGUUCGGCCGGAUCUG- -5'
28326 3' -50.7 NC_005905.1 + 21819 0.96 0.030103
Target:  5'- gCUAACUUGGccCAAGCCGGCCUAGACu -3'
miRNA:   3'- -GAUUGAACCaaGUUCGGCCGGAUCUG- -5'
28326 3' -50.7 NC_005905.1 + 21864 0.96 0.030103
Target:  5'- gCUAACUUGGccCAAGCCGGCCUAGACu -3'
miRNA:   3'- -GAUUGAACCaaGUUCGGCCGGAUCUG- -5'
28326 3' -50.7 NC_005905.1 + 9123 0.96 0.032919
Target:  5'- gCUAGCUUGGccCAAGCCGGCCUGGACu -3'
miRNA:   3'- -GAUUGAACCaaGUUCGGCCGGAUCUG- -5'
28326 3' -50.7 NC_005905.1 + 8903 0.96 0.032919
Target:  5'- gCUAGCUUGGccCAAGCCGGCCUGGACu -3'
miRNA:   3'- -GAUUGAACCaaGUUCGGCCGGAUCUG- -5'
28326 3' -50.7 NC_005905.1 + 8948 0.96 0.032919
Target:  5'- gCUAGCUUGGccCAAGCCGGCCUGGACu -3'
miRNA:   3'- -GAUUGAACCaaGUUCGGCCGGAUCUG- -5'
28326 3' -50.7 NC_005905.1 + 20019 0.96 0.032919
Target:  5'- gCUAGCUUGGccCAAGCCGGCCUGGACu -3'
miRNA:   3'- -GAUUGAACCaaGUUCGGCCGGAUCUG- -5'
28326 3' -50.7 NC_005905.1 + 19845 0.96 0.032919
Target:  5'- gCUAGCUUGGccCAAGCCGGCCUGGACu -3'
miRNA:   3'- -GAUUGAACCaaGUUCGGCCGGAUCUG- -5'
28326 3' -50.7 NC_005905.1 + 19670 0.96 0.032919
Target:  5'- gCUAGCUUGGccCAAGCCGGCCUGGACu -3'
miRNA:   3'- -GAUUGAACCaaGUUCGGCCGGAUCUG- -5'
28326 3' -50.7 NC_005905.1 + 19625 0.96 0.032919
Target:  5'- gCUAGCUUGGccCAAGCCGGCCUGGACu -3'
miRNA:   3'- -GAUUGAACCaaGUUCGGCCGGAUCUG- -5'
28326 3' -50.7 NC_005905.1 + 17597 0.96 0.032919
Target:  5'- gCUAGCUUGGccCAAGCCGGCCUGGACu -3'
miRNA:   3'- -GAUUGAACCaaGUUCGGCCGGAUCUG- -5'
28326 3' -50.7 NC_005905.1 + 19780 0.96 0.032919
Target:  5'- gCUAGCUUGGccCAAGCCGGCCUGGACu -3'
miRNA:   3'- -GAUUGAACCaaGUUCGGCCGGAUCUG- -5'
28326 3' -50.7 NC_005905.1 + 19470 0.9 0.073049
Target:  5'- gCUAGCUUGGccCAAGCCGGCUUGGACu -3'
miRNA:   3'- -GAUUGAACCaaGUUCGGCCGGAUCUG- -5'
28326 3' -50.7 NC_005905.1 + 19515 0.9 0.073049
Target:  5'- gCUAGCUUGGccCAAGCCGGUCUGGACu -3'
miRNA:   3'- -GAUUGAACCaaGUUCGGCCGGAUCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.