Results 1 - 20 of 88 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28326 | 3' | -50.7 | NC_005905.1 | + | 8595 | 0.68 | 0.893292 |
Target: 5'- uUAGCUUcgacaaauuuuaccGuGUcCAGGCCGGCUUGGGCc -3' miRNA: 3'- gAUUGAA--------------C-CAaGUUCGGCCGGAUCUG- -5' |
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28326 | 3' | -50.7 | NC_005905.1 | + | 8729 | 0.97 | 0.028358 |
Target: 5'- gCUAGCUUGGccCAAGCCGGCCUGGACa -3' miRNA: 3'- -GAUUGAACCaaGUUCGGCCGGAUCUG- -5' |
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28326 | 3' | -50.7 | NC_005905.1 | + | 8776 | 0.71 | 0.801719 |
Target: 5'- -aGAUUaGGUUuaucgagucCAGGCCGGCUUGGGCc -3' miRNA: 3'- gaUUGAaCCAA---------GUUCGGCCGGAUCUG- -5' |
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28326 | 3' | -50.7 | NC_005905.1 | + | 8794 | 0.86 | 0.141248 |
Target: 5'- gCUAGCUUGGccCAAGCCGGgCUGGACu -3' miRNA: 3'- -GAUUGAACCaaGUUCGGCCgGAUCUG- -5' |
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28326 | 3' | -50.7 | NC_005905.1 | + | 8813 | 0.71 | 0.778902 |
Target: 5'- gCUAGCUUcgacaaauuuuaccGaGUcCAGGCCGGCUUGGGCc -3' miRNA: 3'- -GAUUGAA--------------C-CAaGUUCGGCCGGAUCUG- -5' |
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28326 | 3' | -50.7 | NC_005905.1 | + | 8839 | 0.85 | 0.149378 |
Target: 5'- gCUAGCUUGGccCAAGCCGGUUUGGACu -3' miRNA: 3'- -GAUUGAACCaaGUUCGGCCGGAUCUG- -5' |
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28326 | 3' | -50.7 | NC_005905.1 | + | 8903 | 0.96 | 0.032919 |
Target: 5'- gCUAGCUUGGccCAAGCCGGCCUGGACu -3' miRNA: 3'- -GAUUGAACCaaGUUCGGCCGGAUCUG- -5' |
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28326 | 3' | -50.7 | NC_005905.1 | + | 8948 | 0.96 | 0.032919 |
Target: 5'- gCUAGCUUGGccCAAGCCGGCCUGGACu -3' miRNA: 3'- -GAUUGAACCaaGUUCGGCCGGAUCUG- -5' |
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28326 | 3' | -50.7 | NC_005905.1 | + | 8995 | 0.71 | 0.801719 |
Target: 5'- -aGAUUaGGUUuaucgagucCAGGCCGGCUUGGGCc -3' miRNA: 3'- gaUUGAaCCAA---------GUUCGGCCGGAUCUG- -5' |
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28326 | 3' | -50.7 | NC_005905.1 | + | 9013 | 0.71 | 0.791909 |
Target: 5'- gCUAACUcUGcc-CAAGCCGGgCUGGACu -3' miRNA: 3'- -GAUUGA-ACcaaGUUCGGCCgGAUCUG- -5' |
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28326 | 3' | -50.7 | NC_005905.1 | + | 9032 | 0.66 | 0.967284 |
Target: 5'- gCUAGCUUcgacaaauuuuaccGaGUcCAGGUCGGCUUGGGCc -3' miRNA: 3'- -GAUUGAA--------------C-CAaGUUCGGCCGGAUCUG- -5' |
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28326 | 3' | -50.7 | NC_005905.1 | + | 9058 | 1.01 | 0.014228 |
Target: 5'- gCUAGCUUGGcUCAAGCCGGCCUGGACu -3' miRNA: 3'- -GAUUGAACCaAGUUCGGCCGGAUCUG- -5' |
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28326 | 3' | -50.7 | NC_005905.1 | + | 9123 | 0.96 | 0.032919 |
Target: 5'- gCUAGCUUGGccCAAGCCGGCCUGGACu -3' miRNA: 3'- -GAUUGAACCaaGUUCGGCCGGAUCUG- -5' |
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28326 | 3' | -50.7 | NC_005905.1 | + | 9168 | 0.82 | 0.243555 |
Target: 5'- gCUAGCUUGGccCAAGCCGaCCUGGACu -3' miRNA: 3'- -GAUUGAACCaaGUUCGGCcGGAUCUG- -5' |
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28326 | 3' | -50.7 | NC_005905.1 | + | 11211 | 0.9 | 0.073049 |
Target: 5'- gCUAGCUUGGccCAAGCCGGUCUGGACu -3' miRNA: 3'- -GAUUGAACCaaGUUCGGCCGGAUCUG- -5' |
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28326 | 3' | -50.7 | NC_005905.1 | + | 11276 | 0.9 | 0.073049 |
Target: 5'- gCUAGCUUGGccCAAGCCGGUCUGGACu -3' miRNA: 3'- -GAUUGAACCaaGUUCGGCCGGAUCUG- -5' |
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28326 | 3' | -50.7 | NC_005905.1 | + | 11341 | 0.9 | 0.073049 |
Target: 5'- gCUAGCUUGGccCAAGCCGGUCUGGACu -3' miRNA: 3'- -GAUUGAACCaaGUUCGGCCGGAUCUG- -5' |
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28326 | 3' | -50.7 | NC_005905.1 | + | 11406 | 0.9 | 0.073049 |
Target: 5'- gCUAGCUUGGccCAAGCCGGUCUGGACu -3' miRNA: 3'- -GAUUGAACCaaGUUCGGCCGGAUCUG- -5' |
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28326 | 3' | -50.7 | NC_005905.1 | + | 11471 | 0.9 | 0.073049 |
Target: 5'- gCUAGCUUGGccCAAGCCGGUCUGGACu -3' miRNA: 3'- -GAUUGAACCaaGUUCGGCCGGAUCUG- -5' |
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28326 | 3' | -50.7 | NC_005905.1 | + | 11536 | 0.9 | 0.073049 |
Target: 5'- gCUAGCUUGGccCAAGCCGGUCUGGACu -3' miRNA: 3'- -GAUUGAACCaaGUUCGGCCGGAUCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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