Results 1 - 20 of 88 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28326 | 3' | -50.7 | NC_005905.1 | + | 21998 | 0.83 | 0.202108 |
Target: 5'- gCUAACUUGGccCAAaCCGGCCUAGACu -3' miRNA: 3'- -GAUUGAACCaaGUUcGGCCGGAUCUG- -5' |
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28326 | 3' | -50.7 | NC_005905.1 | + | 20019 | 0.96 | 0.032919 |
Target: 5'- gCUAGCUUGGccCAAGCCGGCCUGGACu -3' miRNA: 3'- -GAUUGAACCaaGUUCGGCCGGAUCUG- -5' |
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28326 | 3' | -50.7 | NC_005905.1 | + | 19470 | 0.9 | 0.073049 |
Target: 5'- gCUAGCUUGGccCAAGCCGGCUUGGACu -3' miRNA: 3'- -GAUUGAACCaaGUUCGGCCGGAUCUG- -5' |
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28326 | 3' | -50.7 | NC_005905.1 | + | 19515 | 0.9 | 0.073049 |
Target: 5'- gCUAGCUUGGccCAAGCCGGUCUGGACu -3' miRNA: 3'- -GAUUGAACCaaGUUCGGCCGGAUCUG- -5' |
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28326 | 3' | -50.7 | NC_005905.1 | + | 19735 | 0.9 | 0.073049 |
Target: 5'- gCUAACUUGGccCAAGCCGGUCUGGACu -3' miRNA: 3'- -GAUUGAACCaaGUUCGGCCGGAUCUG- -5' |
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28326 | 3' | -50.7 | NC_005905.1 | + | 19910 | 0.9 | 0.073049 |
Target: 5'- gCUAGCUUGGccCAAGCCGGUCUGGACu -3' miRNA: 3'- -GAUUGAACCaaGUUCGGCCGGAUCUG- -5' |
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28326 | 3' | -50.7 | NC_005905.1 | + | 20079 | 0.9 | 0.073049 |
Target: 5'- gCUAGCUUGGccCAAGCCGGUCUGGACu -3' miRNA: 3'- -GAUUGAACCaaGUUCGGCCGGAUCUG- -5' |
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28326 | 3' | -50.7 | NC_005905.1 | + | 17707 | 0.84 | 0.181279 |
Target: 5'- gCUAGCUUGGccCAAGCCGGCCUAaACu -3' miRNA: 3'- -GAUUGAACCaaGUUCGGCCGGAUcUG- -5' |
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28326 | 3' | -50.7 | NC_005905.1 | + | 17027 | 0.84 | 0.186301 |
Target: 5'- aCUAACUcGGcUCAAGCCGGgCUGGACu -3' miRNA: 3'- -GAUUGAaCCaAGUUCGGCCgGAUCUG- -5' |
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28326 | 3' | -50.7 | NC_005905.1 | + | 19845 | 0.96 | 0.032919 |
Target: 5'- gCUAGCUUGGccCAAGCCGGCCUGGACu -3' miRNA: 3'- -GAUUGAACCaaGUUCGGCCGGAUCUG- -5' |
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28326 | 3' | -50.7 | NC_005905.1 | + | 19780 | 0.96 | 0.032919 |
Target: 5'- gCUAGCUUGGccCAAGCCGGCCUGGACu -3' miRNA: 3'- -GAUUGAACCaaGUUCGGCCGGAUCUG- -5' |
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28326 | 3' | -50.7 | NC_005905.1 | + | 19670 | 0.96 | 0.032919 |
Target: 5'- gCUAGCUUGGccCAAGCCGGCCUGGACu -3' miRNA: 3'- -GAUUGAACCaaGUUCGGCCGGAUCUG- -5' |
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28326 | 3' | -50.7 | NC_005905.1 | + | 17532 | 1.01 | 0.01511 |
Target: 5'- gCUAGCUUGGUcCAAGCCGGCCUGGACu -3' miRNA: 3'- -GAUUGAACCAaGUUCGGCCGGAUCUG- -5' |
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28326 | 3' | -50.7 | NC_005905.1 | + | 19405 | 1.01 | 0.01511 |
Target: 5'- gCUAGCUUGGUcCAAGCCGGCCUGGACu -3' miRNA: 3'- -GAUUGAACCAaGUUCGGCCGGAUCUG- -5' |
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28326 | 3' | -50.7 | NC_005905.1 | + | 17662 | 0.97 | 0.026713 |
Target: 5'- gCUAGCUUGGUcCAAGCCGGCCUGGAUu -3' miRNA: 3'- -GAUUGAACCAaGUUCGGCCGGAUCUG- -5' |
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28326 | 3' | -50.7 | NC_005905.1 | + | 21774 | 0.96 | 0.030103 |
Target: 5'- gCUAACUUGGccCAAGCCGGCCUAGACu -3' miRNA: 3'- -GAUUGAACCaaGUUCGGCCGGAUCUG- -5' |
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28326 | 3' | -50.7 | NC_005905.1 | + | 21819 | 0.96 | 0.030103 |
Target: 5'- gCUAACUUGGccCAAGCCGGCCUAGACu -3' miRNA: 3'- -GAUUGAACCaaGUUCGGCCGGAUCUG- -5' |
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28326 | 3' | -50.7 | NC_005905.1 | + | 21864 | 0.96 | 0.030103 |
Target: 5'- gCUAACUUGGccCAAGCCGGCCUAGACu -3' miRNA: 3'- -GAUUGAACCaaGUUCGGCCGGAUCUG- -5' |
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28326 | 3' | -50.7 | NC_005905.1 | + | 17597 | 0.96 | 0.032919 |
Target: 5'- gCUAGCUUGGccCAAGCCGGCCUGGACu -3' miRNA: 3'- -GAUUGAACCaaGUUCGGCCGGAUCUG- -5' |
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28326 | 3' | -50.7 | NC_005905.1 | + | 19625 | 0.96 | 0.032919 |
Target: 5'- gCUAGCUUGGccCAAGCCGGCCUGGACu -3' miRNA: 3'- -GAUUGAACCaaGUUCGGCCGGAUCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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