miRNA display CGI


Results 1 - 20 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28326 3' -50.7 NC_005905.1 + 19739 0.66 0.957202
Target:  5'- ------cGaGUcCAGGCCGGCUUGGGCc -3'
miRNA:   3'- gauugaaC-CAaGUUCGGCCGGAUCUG- -5'
28326 3' -50.7 NC_005905.1 + 9168 0.82 0.243555
Target:  5'- gCUAGCUUGGccCAAGCCGaCCUGGACu -3'
miRNA:   3'- -GAUUGAACCaaGUUCGGCcGGAUCUG- -5'
28326 3' -50.7 NC_005905.1 + 8794 0.86 0.141248
Target:  5'- gCUAGCUUGGccCAAGCCGGgCUGGACu -3'
miRNA:   3'- -GAUUGAACCaaGUUCGGCCgGAUCUG- -5'
28326 3' -50.7 NC_005905.1 + 9058 1.01 0.014228
Target:  5'- gCUAGCUUGGcUCAAGCCGGCCUGGACu -3'
miRNA:   3'- -GAUUGAACCaAGUUCGGCCGGAUCUG- -5'
28326 3' -50.7 NC_005905.1 + 17527 0.67 0.943723
Target:  5'- uUGGCUUGGgcCAAGCUaGCUUcGACa -3'
miRNA:   3'- gAUUGAACCaaGUUCGGcCGGAuCUG- -5'
28326 3' -50.7 NC_005905.1 + 20183 0.7 0.820782
Target:  5'- -cGGCUUGGgcCAAGCUaGCCUcGACa -3'
miRNA:   3'- gaUUGAACCaaGUUCGGcCGGAuCUG- -5'
28326 3' -50.7 NC_005905.1 + 19797 0.71 0.801719
Target:  5'- -aGAUUaGGUUuaucgagucCAGGCCGGCUUGGGCc -3'
miRNA:   3'- gaUUGAaCCAA---------GUUCGGCCGGAUCUG- -5'
28326 3' -50.7 NC_005905.1 + 19907 0.71 0.801719
Target:  5'- -aGAUUaGGUUuaucgagucCAGGCCGGCUUGGGCc -3'
miRNA:   3'- gaUUGAaCCAA---------GUUCGGCCGGAUCUG- -5'
28326 3' -50.7 NC_005905.1 + 9013 0.71 0.791909
Target:  5'- gCUAACUcUGcc-CAAGCCGGgCUGGACu -3'
miRNA:   3'- -GAUUGA-ACcaaGUUCGGCCgGAUCUG- -5'
28326 3' -50.7 NC_005905.1 + 17979 0.74 0.597428
Target:  5'- -gAACUcGGUUUAAGCCGGCCa---- -3'
miRNA:   3'- gaUUGAaCCAAGUUCGGCCGGaucug -5'
28326 3' -50.7 NC_005905.1 + 19605 0.72 0.739466
Target:  5'- gCUAGCUUcacaaauuuuaucGaGUcCAAGCCGGCUUGGGCc -3'
miRNA:   3'- -GAUUGAA-------------C-CAaGUUCGGCCGGAUCUG- -5'
28326 3' -50.7 NC_005905.1 + 20147 0.71 0.801719
Target:  5'- -aGAUUaGGUUuaucgagucCAGGCCGGCUUGGGCc -3'
miRNA:   3'- gaUUGAaCCAA---------GUUCGGCCGGAUCUG- -5'
28326 3' -50.7 NC_005905.1 + 17797 0.67 0.95032
Target:  5'- gCUAGCUUcGacaaauuuuaucgaaUcCAGGCCGGCUUGGACc -3'
miRNA:   3'- -GAUUGAAcC---------------AaGUUCGGCCGGAUCUG- -5'
28326 3' -50.7 NC_005905.1 + 17841 0.73 0.683034
Target:  5'- uUAGCUUcgacaaauuuuaucGaGUUUAGGCCGGCUUGGGCc -3'
miRNA:   3'- gAUUGAA--------------C-CAAGUUCGGCCGGAUCUG- -5'
28326 3' -50.7 NC_005905.1 + 17307 0.67 0.943723
Target:  5'- uUGGCUUGGgcCAAGCUaGCUUcGACa -3'
miRNA:   3'- gAUUGAACCaaGUUCGGcCGGAuCUG- -5'
28326 3' -50.7 NC_005905.1 + 19972 0.71 0.801719
Target:  5'- -aGAUUaGGUUuaucgagucCAGGCCGGCUUGGGCc -3'
miRNA:   3'- gaUUGAaCCAA---------GUUCGGCCGGAUCUG- -5'
28326 3' -50.7 NC_005905.1 + 19509 0.74 0.619672
Target:  5'- -cGGCUUGGacCAAGCUaGCCUGGAUa -3'
miRNA:   3'- gaUUGAACCaaGUUCGGcCGGAUCUG- -5'
28326 3' -50.7 NC_005905.1 + 8839 0.85 0.149378
Target:  5'- gCUAGCUUGGccCAAGCCGGUUUGGACu -3'
miRNA:   3'- -GAUUGAACCaaGUUCGGCCGGAUCUG- -5'
28326 3' -50.7 NC_005905.1 + 17417 0.67 0.943723
Target:  5'- uUGGCUUGGgcCAAGCUaGCUUcGACa -3'
miRNA:   3'- gAUUGAACCaaGUUCGGcCGGAuCUG- -5'
28326 3' -50.7 NC_005905.1 + 17724 0.71 0.801719
Target:  5'- -aGAUUaGGUUuaucgagucCAGGCCGGCUUGGGCc -3'
miRNA:   3'- gaUUGAaCCAA---------GUUCGGCCGGAUCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.