miRNA display CGI


Results 1 - 20 of 88 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28326 3' -50.7 NC_005905.1 + 49380 0.79 0.36444
Target:  5'- -aAACccGGUaggcUCAAGCCGGUCUAGACu -3'
miRNA:   3'- gaUUGaaCCA----AGUUCGGCCGGAUCUG- -5'
28326 3' -50.7 NC_005905.1 + 49336 0.7 0.830014
Target:  5'- -aGGCUcGGUcggcUCAAGCCGGUCcAGAUu -3'
miRNA:   3'- gaUUGAaCCA----AGUUCGGCCGGaUCUG- -5'
28326 3' -50.7 NC_005905.1 + 49291 0.79 0.36444
Target:  5'- -aGGCUcGGUcggcUCAAGCCGGUCUAGAUu -3'
miRNA:   3'- gaUUGAaCCA----AGUUCGGCCGGAUCUG- -5'
28326 3' -50.7 NC_005905.1 + 49246 0.83 0.224985
Target:  5'- -aGGCUcGGUcggcUCAAGCCGGUCUAGACu -3'
miRNA:   3'- gaUUGAaCCA----AGUUCGGCCGGAUCUG- -5'
28326 3' -50.7 NC_005905.1 + 49201 0.79 0.36444
Target:  5'- -aGGCUcGGUcggcUCAAGCCGGUCUAGAUu -3'
miRNA:   3'- gaUUGAaCCA----AGUUCGGCCGGAUCUG- -5'
28326 3' -50.7 NC_005905.1 + 49156 0.83 0.224985
Target:  5'- -aGGCUcGGUuggcUCAAGCCGGUCUAGACu -3'
miRNA:   3'- gaUUGAaCCA----AGUUCGGCCGGAUCUG- -5'
28326 3' -50.7 NC_005905.1 + 49111 0.83 0.224985
Target:  5'- -aGGCUcGGUuggcUCAAGCCGGUCUAGACu -3'
miRNA:   3'- gaUUGAaCCA----AGUUCGGCCGGAUCUG- -5'
28326 3' -50.7 NC_005905.1 + 49066 0.79 0.36444
Target:  5'- -aGGCUcGGUcggcUCAAGCCGGUCUAGAUu -3'
miRNA:   3'- gaUUGAaCCA----AGUUCGGCCGGAUCUG- -5'
28326 3' -50.7 NC_005905.1 + 49021 0.83 0.224985
Target:  5'- -aGGCUcGGUuggcUCAAGCCGGUCUAGACu -3'
miRNA:   3'- gaUUGAaCCA----AGUUCGGCCGGAUCUG- -5'
28326 3' -50.7 NC_005905.1 + 48976 0.83 0.224985
Target:  5'- -aGGCUcGGUuggcUCAAGCCGGUCUAGACu -3'
miRNA:   3'- gaUUGAaCCA----AGUUCGGCCGGAUCUG- -5'
28326 3' -50.7 NC_005905.1 + 48931 0.79 0.355785
Target:  5'- -aAGCUcGGUcggcUCAAGCCGGUCUAGAUu -3'
miRNA:   3'- gaUUGAaCCA----AGUUCGGCCGGAUCUG- -5'
28326 3' -50.7 NC_005905.1 + 22187 0.67 0.927737
Target:  5'- -cAugUUGGgcCAAGCCGGUUUAaauacGACa -3'
miRNA:   3'- gaUugAACCaaGUUCGGCCGGAU-----CUG- -5'
28326 3' -50.7 NC_005905.1 + 22043 0.76 0.505047
Target:  5'- gCUAACUUGGccaaagcaggccUCGacucauucgacccaAGCCGGCCUGGGCu -3'
miRNA:   3'- -GAUUGAACCa-----------AGU--------------UCGGCCGGAUCUG- -5'
28326 3' -50.7 NC_005905.1 + 21998 0.83 0.202108
Target:  5'- gCUAACUUGGccCAAaCCGGCCUAGACu -3'
miRNA:   3'- -GAUUGAACCaaGUUcGGCCGGAUCUG- -5'
28326 3' -50.7 NC_005905.1 + 21956 0.81 0.263382
Target:  5'- --uACUUGGcUCAAGCCGGCCUAaACu -3'
miRNA:   3'- gauUGAACCaAGUUCGGCCGGAUcUG- -5'
28326 3' -50.7 NC_005905.1 + 21909 0.76 0.499786
Target:  5'- gCUAACUUGGUUCAAaCCGaaCUAGACu -3'
miRNA:   3'- -GAUUGAACCAAGUUcGGCcgGAUCUG- -5'
28326 3' -50.7 NC_005905.1 + 21864 0.96 0.030103
Target:  5'- gCUAACUUGGccCAAGCCGGCCUAGACu -3'
miRNA:   3'- -GAUUGAACCaaGUUCGGCCGGAUCUG- -5'
28326 3' -50.7 NC_005905.1 + 21819 0.96 0.030103
Target:  5'- gCUAACUUGGccCAAGCCGGCCUAGACu -3'
miRNA:   3'- -GAUUGAACCaaGUUCGGCCGGAUCUG- -5'
28326 3' -50.7 NC_005905.1 + 21774 0.96 0.030103
Target:  5'- gCUAACUUGGccCAAGCCGGCCUAGACu -3'
miRNA:   3'- -GAUUGAACCaaGUUCGGCCGGAUCUG- -5'
28326 3' -50.7 NC_005905.1 + 21729 1.1 0.003659
Target:  5'- gCUAACUUGGUUCAAGCCGGCCUAGACu -3'
miRNA:   3'- -GAUUGAACCAAGUUCGGCCGGAUCUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.