miRNA display CGI


Results 21 - 40 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28326 3' -50.7 NC_005905.1 + 19972 0.71 0.801719
Target:  5'- -aGAUUaGGUUuaucgagucCAGGCCGGCUUGGGCc -3'
miRNA:   3'- gaUUGAaCCAA---------GUUCGGCCGGAUCUG- -5'
28326 3' -50.7 NC_005905.1 + 17724 0.71 0.801719
Target:  5'- -aGAUUaGGUUuaucgagucCAGGCCGGCUUGGGCc -3'
miRNA:   3'- gaUUGAaCCAA---------GUUCGGCCGGAUCUG- -5'
28326 3' -50.7 NC_005905.1 + 19797 0.71 0.801719
Target:  5'- -aGAUUaGGUUuaucgagucCAGGCCGGCUUGGGCc -3'
miRNA:   3'- gaUUGAaCCAA---------GUUCGGCCGGAUCUG- -5'
28326 3' -50.7 NC_005905.1 + 19907 0.71 0.801719
Target:  5'- -aGAUUaGGUUuaucgagucCAGGCCGGCUUGGGCc -3'
miRNA:   3'- gaUUGAaCCAA---------GUUCGGCCGGAUCUG- -5'
28326 3' -50.7 NC_005905.1 + 9013 0.71 0.791909
Target:  5'- gCUAACUcUGcc-CAAGCCGGgCUGGACu -3'
miRNA:   3'- -GAUUGA-ACcaaGUUCGGCCgGAUCUG- -5'
28326 3' -50.7 NC_005905.1 + 8813 0.71 0.778902
Target:  5'- gCUAGCUUcgacaaauuuuaccGaGUcCAGGCCGGCUUGGGCc -3'
miRNA:   3'- -GAUUGAA--------------C-CAaGUUCGGCCGGAUCUG- -5'
28326 3' -50.7 NC_005905.1 + 17659 0.72 0.740528
Target:  5'- -aGAUUaGGUUuaucgagucCAGGCCGGCUUGGACc -3'
miRNA:   3'- gaUUGAaCCAA---------GUUCGGCCGGAUCUG- -5'
28326 3' -50.7 NC_005905.1 + 19605 0.72 0.739466
Target:  5'- gCUAGCUUcacaaauuuuaucGaGUcCAAGCCGGCUUGGGCc -3'
miRNA:   3'- -GAUUGAA-------------C-CAaGUUCGGCCGGAUCUG- -5'
28326 3' -50.7 NC_005905.1 + 19955 0.73 0.686342
Target:  5'- gCUAGC-UGGccCAAGCCGaCCUGGACu -3'
miRNA:   3'- -GAUUGaACCaaGUUCGGCcGGAUCUG- -5'
28326 3' -50.7 NC_005905.1 + 17841 0.73 0.683034
Target:  5'- uUAGCUUcgacaaauuuuaucGaGUUUAGGCCGGCUUGGGCc -3'
miRNA:   3'- gAUUGAA--------------C-CAAGUUCGGCCGGAUCUG- -5'
28326 3' -50.7 NC_005905.1 + 19509 0.74 0.619672
Target:  5'- -cGGCUUGGacCAAGCUaGCCUGGAUa -3'
miRNA:   3'- gaUUGAACCaaGUUCGGcCGGAUCUG- -5'
28326 3' -50.7 NC_005905.1 + 17979 0.74 0.597428
Target:  5'- -gAACUcGGUUUAAGCCGGCCa---- -3'
miRNA:   3'- gaUUGAaCCAAGUUCGGCCGGaucug -5'
28326 3' -50.7 NC_005905.1 + 22043 0.76 0.505047
Target:  5'- gCUAACUUGGccaaagcaggccUCGacucauucgacccaAGCCGGCCUGGGCu -3'
miRNA:   3'- -GAUUGAACCa-----------AGU--------------UCGGCCGGAUCUG- -5'
28326 3' -50.7 NC_005905.1 + 21909 0.76 0.499786
Target:  5'- gCUAACUUGGUUCAAaCCGaaCUAGACu -3'
miRNA:   3'- -GAUUGAACCAAGUUcGGCcgGAUCUG- -5'
28326 3' -50.7 NC_005905.1 + 17137 0.78 0.409855
Target:  5'- gCUAACUcGGccCAAGCCGGgCUGGACu -3'
miRNA:   3'- -GAUUGAaCCaaGUUCGGCCgGAUCUG- -5'
28326 3' -50.7 NC_005905.1 + 49380 0.79 0.36444
Target:  5'- -aAACccGGUaggcUCAAGCCGGUCUAGACu -3'
miRNA:   3'- gaUUGaaCCA----AGUUCGGCCGGAUCUG- -5'
28326 3' -50.7 NC_005905.1 + 49291 0.79 0.36444
Target:  5'- -aGGCUcGGUcggcUCAAGCCGGUCUAGAUu -3'
miRNA:   3'- gaUUGAaCCA----AGUUCGGCCGGAUCUG- -5'
28326 3' -50.7 NC_005905.1 + 49066 0.79 0.36444
Target:  5'- -aGGCUcGGUcggcUCAAGCCGGUCUAGAUu -3'
miRNA:   3'- gaUUGAaCCA----AGUUCGGCCGGAUCUG- -5'
28326 3' -50.7 NC_005905.1 + 49201 0.79 0.36444
Target:  5'- -aGGCUcGGUcggcUCAAGCCGGUCUAGAUu -3'
miRNA:   3'- gaUUGAaCCA----AGUUCGGCCGGAUCUG- -5'
28326 3' -50.7 NC_005905.1 + 48931 0.79 0.355785
Target:  5'- -aAGCUcGGUcggcUCAAGCCGGUCUAGAUu -3'
miRNA:   3'- gaUUGAaCCA----AGUUCGGCCGGAUCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.