miRNA display CGI


Results 41 - 60 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28326 3' -50.7 NC_005905.1 + 21684 0.8 0.322627
Target:  5'- gCUAACUUGGccaAAGCCGGCCUAaACu -3'
miRNA:   3'- -GAUUGAACCaagUUCGGCCGGAUcUG- -5'
28326 3' -50.7 NC_005905.1 + 21956 0.81 0.263382
Target:  5'- --uACUUGGcUCAAGCCGGCCUAaACu -3'
miRNA:   3'- gauUGAACCaAGUUCGGCCGGAUcUG- -5'
28326 3' -50.7 NC_005905.1 + 9168 0.82 0.243555
Target:  5'- gCUAGCUUGGccCAAGCCGaCCUGGACu -3'
miRNA:   3'- -GAUUGAACCaaGUUCGGCcGGAUCUG- -5'
28326 3' -50.7 NC_005905.1 + 49111 0.83 0.224985
Target:  5'- -aGGCUcGGUuggcUCAAGCCGGUCUAGACu -3'
miRNA:   3'- gaUUGAaCCA----AGUUCGGCCGGAUCUG- -5'
28326 3' -50.7 NC_005905.1 + 49246 0.83 0.224985
Target:  5'- -aGGCUcGGUcggcUCAAGCCGGUCUAGACu -3'
miRNA:   3'- gaUUGAaCCA----AGUUCGGCCGGAUCUG- -5'
28326 3' -50.7 NC_005905.1 + 49156 0.83 0.224985
Target:  5'- -aGGCUcGGUuggcUCAAGCCGGUCUAGACu -3'
miRNA:   3'- gaUUGAaCCA----AGUUCGGCCGGAUCUG- -5'
28326 3' -50.7 NC_005905.1 + 49021 0.83 0.224985
Target:  5'- -aGGCUcGGUuggcUCAAGCCGGUCUAGACu -3'
miRNA:   3'- gaUUGAaCCA----AGUUCGGCCGGAUCUG- -5'
28326 3' -50.7 NC_005905.1 + 48976 0.83 0.224985
Target:  5'- -aGGCUcGGUuggcUCAAGCCGGUCUAGACu -3'
miRNA:   3'- gaUUGAaCCA----AGUUCGGCCGGAUCUG- -5'
28326 3' -50.7 NC_005905.1 + 21998 0.83 0.202108
Target:  5'- gCUAACUUGGccCAAaCCGGCCUAGACu -3'
miRNA:   3'- -GAUUGAACCaaGUUcGGCCGGAUCUG- -5'
28326 3' -50.7 NC_005905.1 + 17027 0.84 0.186301
Target:  5'- aCUAACUcGGcUCAAGCCGGgCUGGACu -3'
miRNA:   3'- -GAUUGAaCCaAGUUCGGCCgGAUCUG- -5'
28326 3' -50.7 NC_005905.1 + 17707 0.84 0.181279
Target:  5'- gCUAGCUUGGccCAAGCCGGCCUAaACu -3'
miRNA:   3'- -GAUUGAACCaaGUUCGGCCGGAUcUG- -5'
28326 3' -50.7 NC_005905.1 + 8839 0.85 0.149378
Target:  5'- gCUAGCUUGGccCAAGCCGGUUUGGACu -3'
miRNA:   3'- -GAUUGAACCaaGUUCGGCCGGAUCUG- -5'
28326 3' -50.7 NC_005905.1 + 8794 0.86 0.141248
Target:  5'- gCUAGCUUGGccCAAGCCGGgCUGGACu -3'
miRNA:   3'- -GAUUGAACCaaGUUCGGCCgGAUCUG- -5'
28326 3' -50.7 NC_005905.1 + 19735 0.9 0.073049
Target:  5'- gCUAACUUGGccCAAGCCGGUCUGGACu -3'
miRNA:   3'- -GAUUGAACCaaGUUCGGCCGGAUCUG- -5'
28326 3' -50.7 NC_005905.1 + 19910 0.9 0.073049
Target:  5'- gCUAGCUUGGccCAAGCCGGUCUGGACu -3'
miRNA:   3'- -GAUUGAACCaaGUUCGGCCGGAUCUG- -5'
28326 3' -50.7 NC_005905.1 + 19515 0.9 0.073049
Target:  5'- gCUAGCUUGGccCAAGCCGGUCUGGACu -3'
miRNA:   3'- -GAUUGAACCaaGUUCGGCCGGAUCUG- -5'
28326 3' -50.7 NC_005905.1 + 20079 0.9 0.073049
Target:  5'- gCUAGCUUGGccCAAGCCGGUCUGGACu -3'
miRNA:   3'- -GAUUGAACCaaGUUCGGCCGGAUCUG- -5'
28326 3' -50.7 NC_005905.1 + 11276 0.9 0.073049
Target:  5'- gCUAGCUUGGccCAAGCCGGUCUGGACu -3'
miRNA:   3'- -GAUUGAACCaaGUUCGGCCGGAUCUG- -5'
28326 3' -50.7 NC_005905.1 + 11211 0.9 0.073049
Target:  5'- gCUAGCUUGGccCAAGCCGGUCUGGACu -3'
miRNA:   3'- -GAUUGAACCaaGUUCGGCCGGAUCUG- -5'
28326 3' -50.7 NC_005905.1 + 19470 0.9 0.073049
Target:  5'- gCUAGCUUGGccCAAGCCGGCUUGGACu -3'
miRNA:   3'- -GAUUGAACCaaGUUCGGCCGGAUCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.