miRNA display CGI


Results 41 - 60 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28326 5' -51.7 NC_005905.1 + 19399 0.84 0.158601
Target:  5'- --aUCcAGGCUAGCUUGGUCCAAGCCg -3'
miRNA:   3'- agcAGcUUCGAUUGAACCGGGUUCGG- -5'
28326 5' -51.7 NC_005905.1 + 17238 0.86 0.123727
Target:  5'- uUUGUCaAAGCUAACUcGGCCUAAGCCg -3'
miRNA:   3'- -AGCAGcUUCGAUUGAaCCGGGUUCGG- -5'
28326 5' -51.7 NC_005905.1 + 17458 0.86 0.123727
Target:  5'- uUUGUCaAAGCUAACUcGGCCUAAGCCg -3'
miRNA:   3'- -AGCAGcUUCGAUUGAaCCGGGUUCGG- -5'
28326 5' -51.7 NC_005905.1 + 17348 0.86 0.123727
Target:  5'- uUUGUCaAAGCUAACUcGGCCUAAGCCg -3'
miRNA:   3'- -AGCAGcUUCGAUUGAaCCGGGUUCGG- -5'
28326 5' -51.7 NC_005905.1 + 17808 0.87 0.117007
Target:  5'- uUUGUCaGAGCUAGCUUGGCCCAAaCCg -3'
miRNA:   3'- -AGCAGcUUCGAUUGAACCGGGUUcGG- -5'
28326 5' -51.7 NC_005905.1 + 8693 0.88 0.10167
Target:  5'- uUUGUCGAAGCUAAaucGGUCCAAGCCg -3'
miRNA:   3'- -AGCAGCUUCGAUUgaaCCGGGUUCGG- -5'
28326 5' -51.7 NC_005905.1 + 17743 0.88 0.088242
Target:  5'- uUUGUCGAAGCUAACUcGGCaCAAGCCg -3'
miRNA:   3'- -AGCAGCUUCGAUUGAaCCGgGUUCGG- -5'
28326 5' -51.7 NC_005905.1 + 21900 0.9 0.066283
Target:  5'- cUCGUCGAAGCUAACUUGGUUCAAaCCg -3'
miRNA:   3'- -AGCAGCUUCGAUUGAACCGGGUUcGG- -5'
28326 5' -51.7 NC_005905.1 + 9022 0.94 0.039324
Target:  5'- uUUGUCGAAGCUAACUcuGCCCAAGCCg -3'
miRNA:   3'- -AGCAGCUUCGAUUGAacCGGGUUCGG- -5'
28326 5' -51.7 NC_005905.1 + 21945 0.95 0.032995
Target:  5'- uUUGUCGAAGCUA-CUUGGCUCAAGCCg -3'
miRNA:   3'- -AGCAGCUUCGAUuGAACCGGGUUCGG- -5'
28326 5' -51.7 NC_005905.1 + 22034 0.95 0.032995
Target:  5'- uUUGUCGAAGCUAACUUGGCCaaagCAGGCCu -3'
miRNA:   3'- -AGCAGCUUCGAUUGAACCGG----GUUCGG- -5'
28326 5' -51.7 NC_005905.1 + 19551 0.97 0.023887
Target:  5'- uUUGUCGAAGCUAGCUUGGCCCAAGaCg -3'
miRNA:   3'- -AGCAGCUUCGAUUGAACCGGGUUCgG- -5'
28326 5' -51.7 NC_005905.1 + 21720 0.99 0.017788
Target:  5'- cUUGUCGAAGCUAACUUGGUUCAAGCCg -3'
miRNA:   3'- -AGCAGCUUCGAUUGAACCGGGUUCGG- -5'
28326 5' -51.7 NC_005905.1 + 19946 1.01 0.013634
Target:  5'- uUUGUCGAAGCUAGC-UGGCCCAAGCCg -3'
miRNA:   3'- -AGCAGCUUCGAUUGaACCGGGUUCGG- -5'
28326 5' -51.7 NC_005905.1 + 21675 1.01 0.012475
Target:  5'- uUCGUCGAAGCUAACUUGGCCaAAGCCg -3'
miRNA:   3'- -AGCAGCUUCGAUUGAACCGGgUUCGG- -5'
28326 5' -51.7 NC_005905.1 + 11217 1.02 0.012112
Target:  5'- --aUCGAAGCUAGCUUGGCCCAAGCCg -3'
miRNA:   3'- agcAGCUUCGAUUGAACCGGGUUCGG- -5'
28326 5' -51.7 NC_005905.1 + 11282 1.02 0.012112
Target:  5'- --aUCGAAGCUAGCUUGGCCCAAGCCg -3'
miRNA:   3'- agcAGCUUCGAUUGAACCGGGUUCGG- -5'
28326 5' -51.7 NC_005905.1 + 11347 1.02 0.012112
Target:  5'- --aUCGAAGCUAGCUUGGCCCAAGCCg -3'
miRNA:   3'- agcAGCUUCGAUUGAACCGGGUUCGG- -5'
28326 5' -51.7 NC_005905.1 + 11412 1.02 0.012112
Target:  5'- --aUCGAAGCUAGCUUGGCCCAAGCCg -3'
miRNA:   3'- agcAGCUUCGAUUGAACCGGGUUCGG- -5'
28326 5' -51.7 NC_005905.1 + 11477 1.02 0.012112
Target:  5'- --aUCGAAGCUAGCUUGGCCCAAGCCg -3'
miRNA:   3'- agcAGCUUCGAUUGAACCGGGUUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.