miRNA display CGI


Results 21 - 40 of 98 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28326 5' -51.7 NC_005905.1 + 12406 0.73 0.632601
Target:  5'- aCGUauaGAuGCUGACgUGGCUCAGGCa -3'
miRNA:   3'- aGCAg--CUuCGAUUGaACCGGGUUCGg -5'
28326 5' -51.7 NC_005905.1 + 8791 0.73 0.621643
Target:  5'- -aGUCcAGGCcGGCUUGGgCCAAGCUa -3'
miRNA:   3'- agCAGcUUCGaUUGAACCgGGUUCGG- -5'
28326 5' -51.7 NC_005905.1 + 19892 0.73 0.621643
Target:  5'- -aGUCcAGGCcGGCUUGGgCCAAGCUa -3'
miRNA:   3'- agCAGcUUCGaUUGAACCgGGUUCGG- -5'
28326 5' -51.7 NC_005905.1 + 19957 0.73 0.621643
Target:  5'- -aGUCcAGGCcGGCUUGGgCCAAGCUa -3'
miRNA:   3'- agCAGcUUCGaUUGAACCgGGUUCGG- -5'
28326 5' -51.7 NC_005905.1 + 20132 0.73 0.621643
Target:  5'- -aGUCcAGGCcGGCUUGGgCCAAGCUa -3'
miRNA:   3'- agCAGcUUCGaUUGAACCgGGUUCGG- -5'
28326 5' -51.7 NC_005905.1 + 19782 0.73 0.621643
Target:  5'- -aGUCcAGGCcGGCUUGGgCCAAGCUa -3'
miRNA:   3'- agCAGcUUCGaUUGAACCgGGUUCGG- -5'
28326 5' -51.7 NC_005905.1 + 19737 0.73 0.621643
Target:  5'- -aGUCcAGGCcGGCUUGGgCCAAGCUa -3'
miRNA:   3'- agCAGcUUCGaUUGAACCgGGUUCGG- -5'
28326 5' -51.7 NC_005905.1 + 17709 0.73 0.621643
Target:  5'- -aGUCcAGGCcGGCUUGGgCCAAGCUa -3'
miRNA:   3'- agCAGcUUCGaUUGAACCgGGUUCGG- -5'
28326 5' -51.7 NC_005905.1 + 8836 0.73 0.621643
Target:  5'- -aGUCcAGGCcGGCUUGGgCCAAGCUa -3'
miRNA:   3'- agCAGcUUCGaUUGAACCgGGUUCGG- -5'
28326 5' -51.7 NC_005905.1 + 9010 0.73 0.621643
Target:  5'- -aGUCcAGGCcGGCUUGGgCCAAGCUa -3'
miRNA:   3'- agCAGcUUCGaUUGAACCgGGUUCGG- -5'
28326 5' -51.7 NC_005905.1 + 19583 0.74 0.588862
Target:  5'- -aGUCcAAGCcGGCUUGGgCCAAGCUa -3'
miRNA:   3'- agCAGcUUCGaUUGAACCgGGUUCGG- -5'
28326 5' -51.7 NC_005905.1 + 17543 0.74 0.588862
Target:  5'- uUUGaUCGAgaccaGGUUGGCUUGGgCCAAGCUa -3'
miRNA:   3'- -AGC-AGCU-----UCGAUUGAACCgGGUUCGG- -5'
28326 5' -51.7 NC_005905.1 + 17433 0.74 0.588862
Target:  5'- uUUGaUCGAgaccaGGUUGGCUUGGgCCAAGCUa -3'
miRNA:   3'- -AGC-AGCU-----UCGAUUGAACCgGGUUCGG- -5'
28326 5' -51.7 NC_005905.1 + 17323 0.74 0.588862
Target:  5'- uUUGaUCGAgaccaGGUUGGCUUGGgCCAAGCUa -3'
miRNA:   3'- -AGC-AGCU-----UCGAUUGAACCgGGUUCGG- -5'
28326 5' -51.7 NC_005905.1 + 17213 0.74 0.588862
Target:  5'- uUUGaUCGAgaccaGGUUGGCUUGGgCCAAGCUa -3'
miRNA:   3'- -AGC-AGCU-----UCGAUUGAACCgGGUUCGG- -5'
28326 5' -51.7 NC_005905.1 + 8616 0.74 0.567174
Target:  5'- gUGUCcAGGCcGGCUUGGgCCAAGCUa -3'
miRNA:   3'- aGCAGcUUCGaUUGAACCgGGUUCGG- -5'
28326 5' -51.7 NC_005905.1 + 48972 0.8 0.282923
Target:  5'- --aUCGAGGCUcGgUUGGCUCAAGCCg -3'
miRNA:   3'- agcAGCUUCGAuUgAACCGGGUUCGG- -5'
28326 5' -51.7 NC_005905.1 + 49017 0.8 0.282923
Target:  5'- --aUCGAGGCUcGgUUGGCUCAAGCCg -3'
miRNA:   3'- agcAGCUUCGAuUgAACCGGGUUCGG- -5'
28326 5' -51.7 NC_005905.1 + 49107 0.8 0.282923
Target:  5'- --aUCGAGGCUcGgUUGGCUCAAGCCg -3'
miRNA:   3'- agcAGCUUCGAuUgAACCGGGUUCGG- -5'
28326 5' -51.7 NC_005905.1 + 49152 0.8 0.282923
Target:  5'- --aUCGAGGCUcGgUUGGCUCAAGCCg -3'
miRNA:   3'- agcAGCUUCGAuUgAACCGGGUUCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.