Results 21 - 40 of 98 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28326 | 5' | -51.7 | NC_005905.1 | + | 11412 | 1.02 | 0.012112 |
Target: 5'- --aUCGAAGCUAGCUUGGCCCAAGCCg -3' miRNA: 3'- agcAGCUUCGAUUGAACCGGGUUCGG- -5' |
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28326 | 5' | -51.7 | NC_005905.1 | + | 11477 | 1.02 | 0.012112 |
Target: 5'- --aUCGAAGCUAGCUUGGCCCAAGCCg -3' miRNA: 3'- agcAGCUUCGAUUGAACCGGGUUCGG- -5' |
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28326 | 5' | -51.7 | NC_005905.1 | + | 11542 | 1.02 | 0.012112 |
Target: 5'- --aUCGAAGCUAGCUUGGCCCAAGCCg -3' miRNA: 3'- agcAGCUUCGAUUGAACCGGGUUCGG- -5' |
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28326 | 5' | -51.7 | NC_005905.1 | + | 11607 | 1.02 | 0.012112 |
Target: 5'- --aUCGAAGCUAGCUUGGCCCAAGCCg -3' miRNA: 3'- agcAGCUUCGAUUGAACCGGGUUCGG- -5' |
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28326 | 5' | -51.7 | NC_005905.1 | + | 11671 | 1.02 | 0.012112 |
Target: 5'- --aUCGAAGCUAGCUUGGCCCAAGCCg -3' miRNA: 3'- agcAGCUUCGAUUGAACCGGGUUCGG- -5' |
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28326 | 5' | -51.7 | NC_005905.1 | + | 11736 | 1.02 | 0.012112 |
Target: 5'- --aUCGAAGCUAGCUUGGCCCAAGCCg -3' miRNA: 3'- agcAGCUUCGAUUGAACCGGGUUCGG- -5' |
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28326 | 5' | -51.7 | NC_005905.1 | + | 11801 | 1.02 | 0.012112 |
Target: 5'- --aUCGAAGCUAGCUUGGCCCAAGCCg -3' miRNA: 3'- agcAGCUUCGAUUGAACCGGGUUCGG- -5' |
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28326 | 5' | -51.7 | NC_005905.1 | + | 11866 | 1.02 | 0.012112 |
Target: 5'- --aUCGAAGCUAGCUUGGCCCAAGCCg -3' miRNA: 3'- agcAGCUUCGAUUGAACCGGGUUCGG- -5' |
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28326 | 5' | -51.7 | NC_005905.1 | + | 11931 | 1.02 | 0.012112 |
Target: 5'- --aUCGAAGCUAGCUUGGCCCAAGCCg -3' miRNA: 3'- agcAGCUUCGAUUGAACCGGGUUCGG- -5' |
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28326 | 5' | -51.7 | NC_005905.1 | + | 12406 | 0.73 | 0.632601 |
Target: 5'- aCGUauaGAuGCUGACgUGGCUCAGGCa -3' miRNA: 3'- aGCAg--CUuCGAUUGaACCGGGUUCGg -5' |
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28326 | 5' | -51.7 | NC_005905.1 | + | 17083 | 1.06 | 0.006307 |
Target: 5'- uUUGUUGAAGCUAGCUUGGCCCAAGCCa -3' miRNA: 3'- -AGCAGCUUCGAUUGAACCGGGUUCGG- -5' |
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28326 | 5' | -51.7 | NC_005905.1 | + | 17128 | 1.02 | 0.011415 |
Target: 5'- uUUGUCGAAGCUAACUcGGCCCAAGCCg -3' miRNA: 3'- -AGCAGCUUCGAUUGAaCCGGGUUCGG- -5' |
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28326 | 5' | -51.7 | NC_005905.1 | + | 17193 | 1.1 | 0.003379 |
Target: 5'- uUUGUCGAAGCUAGCUUGGCCCAAGCCa -3' miRNA: 3'- -AGCAGCUUCGAUUGAACCGGGUUCGG- -5' |
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28326 | 5' | -51.7 | NC_005905.1 | + | 17213 | 0.74 | 0.588862 |
Target: 5'- uUUGaUCGAgaccaGGUUGGCUUGGgCCAAGCUa -3' miRNA: 3'- -AGC-AGCU-----UCGAUUGAACCgGGUUCGG- -5' |
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28326 | 5' | -51.7 | NC_005905.1 | + | 17238 | 0.86 | 0.123727 |
Target: 5'- uUUGUCaAAGCUAACUcGGCCUAAGCCg -3' miRNA: 3'- -AGCAGcUUCGAUUGAaCCGGGUUCGG- -5' |
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28326 | 5' | -51.7 | NC_005905.1 | + | 17303 | 1.1 | 0.003379 |
Target: 5'- uUUGUCGAAGCUAGCUUGGCCCAAGCCa -3' miRNA: 3'- -AGCAGCUUCGAUUGAACCGGGUUCGG- -5' |
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28326 | 5' | -51.7 | NC_005905.1 | + | 17323 | 0.74 | 0.588862 |
Target: 5'- uUUGaUCGAgaccaGGUUGGCUUGGgCCAAGCUa -3' miRNA: 3'- -AGC-AGCU-----UCGAUUGAACCgGGUUCGG- -5' |
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28326 | 5' | -51.7 | NC_005905.1 | + | 17348 | 0.86 | 0.123727 |
Target: 5'- uUUGUCaAAGCUAACUcGGCCUAAGCCg -3' miRNA: 3'- -AGCAGcUUCGAUUGAaCCGGGUUCGG- -5' |
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28326 | 5' | -51.7 | NC_005905.1 | + | 17413 | 1.1 | 0.003379 |
Target: 5'- uUUGUCGAAGCUAGCUUGGCCCAAGCCa -3' miRNA: 3'- -AGCAGCUUCGAUUGAACCGGGUUCGG- -5' |
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28326 | 5' | -51.7 | NC_005905.1 | + | 17433 | 0.74 | 0.588862 |
Target: 5'- uUUGaUCGAgaccaGGUUGGCUUGGgCCAAGCUa -3' miRNA: 3'- -AGC-AGCU-----UCGAUUGAACCgGGUUCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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