miRNA display CGI


Results 1 - 20 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28326 5' -51.7 NC_005905.1 + 8616 0.74 0.567174
Target:  5'- gUGUCcAGGCcGGCUUGGgCCAAGCUa -3'
miRNA:   3'- aGCAGcUUCGaUUGAACCgGGUUCGG- -5'
28326 5' -51.7 NC_005905.1 + 8678 0.67 0.907029
Target:  5'- --aUCGAguccAGCccGGCUUGGgCCAAGCUa -3'
miRNA:   3'- agcAGCU----UCGa-UUGAACCgGGUUCGG- -5'
28326 5' -51.7 NC_005905.1 + 8693 0.88 0.10167
Target:  5'- uUUGUCGAAGCUAAaucGGUCCAAGCCg -3'
miRNA:   3'- -AGCAGCUUCGAUUgaaCCGGGUUCGG- -5'
28326 5' -51.7 NC_005905.1 + 8738 1.1 0.003379
Target:  5'- uUUGUCGAAGCUAGCUUGGCCCAAGCCg -3'
miRNA:   3'- -AGCAGCUUCGAUUGAACCGGGUUCGG- -5'
28326 5' -51.7 NC_005905.1 + 8791 0.73 0.621643
Target:  5'- -aGUCcAGGCcGGCUUGGgCCAAGCUa -3'
miRNA:   3'- agCAGcUUCGaUUGAACCgGGUUCGG- -5'
28326 5' -51.7 NC_005905.1 + 8803 1.1 0.003379
Target:  5'- uUUGUCGAAGCUAGCUUGGCCCAAGCCg -3'
miRNA:   3'- -AGCAGCUUCGAUUGAACCGGGUUCGG- -5'
28326 5' -51.7 NC_005905.1 + 8836 0.73 0.621643
Target:  5'- -aGUCcAGGCcGGCUUGGgCCAAGCUa -3'
miRNA:   3'- agCAGcUUCGaUUGAACCgGGUUCGG- -5'
28326 5' -51.7 NC_005905.1 + 8848 1.1 0.00328
Target:  5'- aUUGUCGAAGCUAGCUUGGCCCAAGCCg -3'
miRNA:   3'- -AGCAGCUUCGAUUGAACCGGGUUCGG- -5'
28326 5' -51.7 NC_005905.1 + 8912 1.1 0.003379
Target:  5'- uUUGUCGAAGCUAGCUUGGCCCAAGCCg -3'
miRNA:   3'- -AGCAGCUUCGAUUGAACCGGGUUCGG- -5'
28326 5' -51.7 NC_005905.1 + 8956 1.09 0.004039
Target:  5'- cUGUCGAAGCUAGCUUGGCCCAAGCCg -3'
miRNA:   3'- aGCAGCUUCGAUUGAACCGGGUUCGG- -5'
28326 5' -51.7 NC_005905.1 + 9010 0.73 0.621643
Target:  5'- -aGUCcAGGCcGGCUUGGgCCAAGCUa -3'
miRNA:   3'- agCAGcUUCGaUUGAACCgGGUUCGG- -5'
28326 5' -51.7 NC_005905.1 + 9022 0.94 0.039324
Target:  5'- uUUGUCGAAGCUAACUcuGCCCAAGCCg -3'
miRNA:   3'- -AGCAGCUUCGAUUGAacCGGGUUCGG- -5'
28326 5' -51.7 NC_005905.1 + 9055 0.7 0.78117
Target:  5'- -aGUCcAGGUcGGCUUGGgCCAAGCUa -3'
miRNA:   3'- agCAGcUUCGaUUGAACCgGGUUCGG- -5'
28326 5' -51.7 NC_005905.1 + 9067 1.04 0.008239
Target:  5'- uUUGUCGAAGCUAGCUUGGCUCAAGCCg -3'
miRNA:   3'- -AGCAGCUUCGAUUGAACCGGGUUCGG- -5'
28326 5' -51.7 NC_005905.1 + 9132 1.1 0.003379
Target:  5'- uUUGUCGAAGCUAGCUUGGCCCAAGCCg -3'
miRNA:   3'- -AGCAGCUUCGAUUGAACCGGGUUCGG- -5'
28326 5' -51.7 NC_005905.1 + 9177 1.1 0.003379
Target:  5'- uUUGUCGAAGCUAGCUUGGCCCAAGCCg -3'
miRNA:   3'- -AGCAGCUUCGAUUGAACCGGGUUCGG- -5'
28326 5' -51.7 NC_005905.1 + 9234 0.67 0.931167
Target:  5'- -------uGCUAACUcuGCCCAAGCCg -3'
miRNA:   3'- agcagcuuCGAUUGAacCGGGUUCGG- -5'
28326 5' -51.7 NC_005905.1 + 11217 1.02 0.012112
Target:  5'- --aUCGAAGCUAGCUUGGCCCAAGCCg -3'
miRNA:   3'- agcAGCUUCGAUUGAACCGGGUUCGG- -5'
28326 5' -51.7 NC_005905.1 + 11282 1.02 0.012112
Target:  5'- --aUCGAAGCUAGCUUGGCCCAAGCCg -3'
miRNA:   3'- agcAGCUUCGAUUGAACCGGGUUCGG- -5'
28326 5' -51.7 NC_005905.1 + 11347 1.02 0.012112
Target:  5'- --aUCGAAGCUAGCUUGGCCCAAGCCg -3'
miRNA:   3'- agcAGCUUCGAUUGAACCGGGUUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.