miRNA display CGI


Results 1 - 20 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28326 5' -51.7 NC_005905.1 + 54450 0.7 0.77119
Target:  5'- aCGUgGAAGCUAuagaaaaaaAUUUGGCCgaAAGUCg -3'
miRNA:   3'- aGCAgCUUCGAU---------UGAACCGGg-UUCGG- -5'
28326 5' -51.7 NC_005905.1 + 49332 0.72 0.676326
Target:  5'- --aUCGAGGCUcGgUcGGCUCAAGCCg -3'
miRNA:   3'- agcAGCUUCGAuUgAaCCGGGUUCGG- -5'
28326 5' -51.7 NC_005905.1 + 49287 0.72 0.676326
Target:  5'- --aUCGAGGCUcGgUcGGCUCAAGCCg -3'
miRNA:   3'- agcAGCUUCGAuUgAaCCGGGUUCGG- -5'
28326 5' -51.7 NC_005905.1 + 49242 0.68 0.878596
Target:  5'- --aUUGAGGCUcGgUcGGCUCAAGCCg -3'
miRNA:   3'- agcAGCUUCGAuUgAaCCGGGUUCGG- -5'
28326 5' -51.7 NC_005905.1 + 49197 0.72 0.676326
Target:  5'- --aUCGAGGCUcGgUcGGCUCAAGCCg -3'
miRNA:   3'- agcAGCUUCGAuUgAaCCGGGUUCGG- -5'
28326 5' -51.7 NC_005905.1 + 49152 0.8 0.282923
Target:  5'- --aUCGAGGCUcGgUUGGCUCAAGCCg -3'
miRNA:   3'- agcAGCUUCGAuUgAACCGGGUUCGG- -5'
28326 5' -51.7 NC_005905.1 + 49107 0.8 0.282923
Target:  5'- --aUCGAGGCUcGgUUGGCUCAAGCCg -3'
miRNA:   3'- agcAGCUUCGAuUgAACCGGGUUCGG- -5'
28326 5' -51.7 NC_005905.1 + 49062 0.72 0.676326
Target:  5'- --aUCGAGGCUcGgUcGGCUCAAGCCg -3'
miRNA:   3'- agcAGCUUCGAuUgAaCCGGGUUCGG- -5'
28326 5' -51.7 NC_005905.1 + 49017 0.8 0.282923
Target:  5'- --aUCGAGGCUcGgUUGGCUCAAGCCg -3'
miRNA:   3'- agcAGCUUCGAuUgAACCGGGUUCGG- -5'
28326 5' -51.7 NC_005905.1 + 48972 0.8 0.282923
Target:  5'- --aUCGAGGCUcGgUUGGCUCAAGCCg -3'
miRNA:   3'- agcAGCUUCGAuUgAACCGGGUUCGG- -5'
28326 5' -51.7 NC_005905.1 + 48921 0.72 0.70872
Target:  5'- aCGUuuacCGAAGCUcGgUcGGCUCAAGCCg -3'
miRNA:   3'- aGCA----GCUUCGAuUgAaCCGGGUUCGG- -5'
28326 5' -51.7 NC_005905.1 + 22156 0.67 0.919645
Target:  5'- -aGUCGAGGCcuGCuUUGGCCaaguuAGCUu -3'
miRNA:   3'- agCAGCUUCGauUG-AACCGGgu---UCGG- -5'
28326 5' -51.7 NC_005905.1 + 22034 0.95 0.032995
Target:  5'- uUUGUCGAAGCUAACUUGGCCaaagCAGGCCu -3'
miRNA:   3'- -AGCAGCUUCGAUUGAACCGG----GUUCGG- -5'
28326 5' -51.7 NC_005905.1 + 21989 1.04 0.008239
Target:  5'- cUCGUCGAAGCUAACUUGGCCCAaaccGGCCu -3'
miRNA:   3'- -AGCAGCUUCGAUUGAACCGGGU----UCGG- -5'
28326 5' -51.7 NC_005905.1 + 21976 0.68 0.870845
Target:  5'- -aGUCuAGGCcGGCUUGGgCCAAGUUa -3'
miRNA:   3'- agCAGcUUCGaUUGAACCgGGUUCGG- -5'
28326 5' -51.7 NC_005905.1 + 21945 0.95 0.032995
Target:  5'- uUUGUCGAAGCUA-CUUGGCUCAAGCCg -3'
miRNA:   3'- -AGCAGCUUCGAUuGAACCGGGUUCGG- -5'
28326 5' -51.7 NC_005905.1 + 21931 0.68 0.870845
Target:  5'- -aGUCuAGGCcGGCUUGGgCCAAGUUa -3'
miRNA:   3'- agCAGcUUCGaUUGAACCgGGUUCGG- -5'
28326 5' -51.7 NC_005905.1 + 21900 0.9 0.066283
Target:  5'- cUCGUCGAAGCUAACUUGGUUCAAaCCg -3'
miRNA:   3'- -AGCAGCUUCGAUUGAACCGGGUUcGG- -5'
28326 5' -51.7 NC_005905.1 + 21886 0.68 0.870845
Target:  5'- -aGUCuAGGCcGGCUUGGgCCAAGUUa -3'
miRNA:   3'- agCAGcUUCGaUUGAACCgGGUUCGG- -5'
28326 5' -51.7 NC_005905.1 + 21855 1.14 0.001864
Target:  5'- cUCGUCGAAGCUAACUUGGCCCAAGCCg -3'
miRNA:   3'- -AGCAGCUUCGAUUGAACCGGGUUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.