Results 1 - 20 of 98 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28326 | 5' | -51.7 | NC_005905.1 | + | 21765 | 1.14 | 0.001864 |
Target: 5'- cUCGUCGAAGCUAACUUGGCCCAAGCCg -3' miRNA: 3'- -AGCAGCUUCGAUUGAACCGGGUUCGG- -5' |
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28326 | 5' | -51.7 | NC_005905.1 | + | 21810 | 1.14 | 0.001864 |
Target: 5'- cUCGUCGAAGCUAACUUGGCCCAAGCCg -3' miRNA: 3'- -AGCAGCUUCGAUUGAACCGGGUUCGG- -5' |
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28326 | 5' | -51.7 | NC_005905.1 | + | 21855 | 1.14 | 0.001864 |
Target: 5'- cUCGUCGAAGCUAACUUGGCCCAAGCCg -3' miRNA: 3'- -AGCAGCUUCGAUUGAACCGGGUUCGG- -5' |
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28326 | 5' | -51.7 | NC_005905.1 | + | 8848 | 1.1 | 0.00328 |
Target: 5'- aUUGUCGAAGCUAGCUUGGCCCAAGCCg -3' miRNA: 3'- -AGCAGCUUCGAUUGAACCGGGUUCGG- -5' |
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28326 | 5' | -51.7 | NC_005905.1 | + | 19901 | 1.1 | 0.003379 |
Target: 5'- uUUGUCGAAGCUAGCUUGGCCCAAGCCg -3' miRNA: 3'- -AGCAGCUUCGAUUGAACCGGGUUCGG- -5' |
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28326 | 5' | -51.7 | NC_005905.1 | + | 20010 | 1.1 | 0.003379 |
Target: 5'- uUUGUCGAAGCUAGCUUGGCCCAAGCCg -3' miRNA: 3'- -AGCAGCUUCGAUUGAACCGGGUUCGG- -5' |
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28326 | 5' | -51.7 | NC_005905.1 | + | 19726 | 1.1 | 0.003379 |
Target: 5'- uUUGUCGAAGCUAACUUGGCCCAAGCCg -3' miRNA: 3'- -AGCAGCUUCGAUUGAACCGGGUUCGG- -5' |
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28326 | 5' | -51.7 | NC_005905.1 | + | 9132 | 1.1 | 0.003379 |
Target: 5'- uUUGUCGAAGCUAGCUUGGCCCAAGCCg -3' miRNA: 3'- -AGCAGCUUCGAUUGAACCGGGUUCGG- -5' |
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28326 | 5' | -51.7 | NC_005905.1 | + | 8803 | 1.1 | 0.003379 |
Target: 5'- uUUGUCGAAGCUAGCUUGGCCCAAGCCg -3' miRNA: 3'- -AGCAGCUUCGAUUGAACCGGGUUCGG- -5' |
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28326 | 5' | -51.7 | NC_005905.1 | + | 8912 | 1.1 | 0.003379 |
Target: 5'- uUUGUCGAAGCUAGCUUGGCCCAAGCCg -3' miRNA: 3'- -AGCAGCUUCGAUUGAACCGGGUUCGG- -5' |
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28326 | 5' | -51.7 | NC_005905.1 | + | 19836 | 1.1 | 0.003379 |
Target: 5'- uUUGUCGAAGCUAGCUUGGCCCAAGCCg -3' miRNA: 3'- -AGCAGCUUCGAUUGAACCGGGUUCGG- -5' |
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28326 | 5' | -51.7 | NC_005905.1 | + | 19771 | 1.1 | 0.003379 |
Target: 5'- uUUGUCGAAGCUAGCUUGGCCCAAGCCg -3' miRNA: 3'- -AGCAGCUUCGAUUGAACCGGGUUCGG- -5' |
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28326 | 5' | -51.7 | NC_005905.1 | + | 19616 | 1.1 | 0.003379 |
Target: 5'- uUUGUCGAAGCUAGCUUGGCCCAAGCCg -3' miRNA: 3'- -AGCAGCUUCGAUUGAACCGGGUUCGG- -5' |
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28326 | 5' | -51.7 | NC_005905.1 | + | 19506 | 1.1 | 0.003379 |
Target: 5'- uUUGUCGAAGCUAGCUUGGCCCAAGCCg -3' miRNA: 3'- -AGCAGCUUCGAUUGAACCGGGUUCGG- -5' |
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28326 | 5' | -51.7 | NC_005905.1 | + | 19461 | 1.1 | 0.003379 |
Target: 5'- uUUGUCGAAGCUAGCUUGGCCCAAGCCg -3' miRNA: 3'- -AGCAGCUUCGAUUGAACCGGGUUCGG- -5' |
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28326 | 5' | -51.7 | NC_005905.1 | + | 17698 | 1.1 | 0.003379 |
Target: 5'- uUUGUCGAAGCUAGCUUGGCCCAAGCCg -3' miRNA: 3'- -AGCAGCUUCGAUUGAACCGGGUUCGG- -5' |
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28326 | 5' | -51.7 | NC_005905.1 | + | 17588 | 1.1 | 0.003379 |
Target: 5'- uUUGUCGAAGCUAGCUUGGCCCAAGCCg -3' miRNA: 3'- -AGCAGCUUCGAUUGAACCGGGUUCGG- -5' |
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28326 | 5' | -51.7 | NC_005905.1 | + | 17413 | 1.1 | 0.003379 |
Target: 5'- uUUGUCGAAGCUAGCUUGGCCCAAGCCa -3' miRNA: 3'- -AGCAGCUUCGAUUGAACCGGGUUCGG- -5' |
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28326 | 5' | -51.7 | NC_005905.1 | + | 17303 | 1.1 | 0.003379 |
Target: 5'- uUUGUCGAAGCUAGCUUGGCCCAAGCCa -3' miRNA: 3'- -AGCAGCUUCGAUUGAACCGGGUUCGG- -5' |
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28326 | 5' | -51.7 | NC_005905.1 | + | 17193 | 1.1 | 0.003379 |
Target: 5'- uUUGUCGAAGCUAGCUUGGCCCAAGCCa -3' miRNA: 3'- -AGCAGCUUCGAUUGAACCGGGUUCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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