miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28327 3' -51.9 NC_005905.1 + 17602 0.77 0.414713
Target:  5'- -cUUGGCcCAAGCCGGcCUGGACUc- -3'
miRNA:   3'- ccAACCGaGUUCGGCCaGAUCUGAac -5'
28327 3' -51.9 NC_005905.1 + 19740 0.85 0.142119
Target:  5'- -cUUGGCcCAAGCCGGUCUGGACUc- -3'
miRNA:   3'- ccAACCGaGUUCGGCCAGAUCUGAac -5'
28327 3' -51.9 NC_005905.1 + 19915 0.85 0.142119
Target:  5'- -cUUGGCcCAAGCCGGUCUGGACUc- -3'
miRNA:   3'- ccAACCGaGUUCGGCCAGAUCUGAac -5'
28327 3' -51.9 NC_005905.1 + 20084 0.85 0.142119
Target:  5'- -cUUGGCcCAAGCCGGUCUGGACUc- -3'
miRNA:   3'- ccAACCGaGUUCGGCCAGAUCUGAac -5'
28327 3' -51.9 NC_005905.1 + 21734 0.82 0.207542
Target:  5'- -cUUGGUUCAAGCCGGcCUAGACUc- -3'
miRNA:   3'- ccAACCGAGUUCGGCCaGAUCUGAac -5'
28327 3' -51.9 NC_005905.1 + 17034 0.82 0.224588
Target:  5'- ---cGGCUCAAGCCGGgCUGGACUc- -3'
miRNA:   3'- ccaaCCGAGUUCGGCCaGAUCUGAac -5'
28327 3' -51.9 NC_005905.1 + 21779 0.77 0.387287
Target:  5'- -cUUGGCcCAAGCCGGcCUAGACUc- -3'
miRNA:   3'- ccAACCGaGUUCGGCCaGAUCUGAac -5'
28327 3' -51.9 NC_005905.1 + 21824 0.77 0.387287
Target:  5'- -cUUGGCcCAAGCCGGcCUAGACUc- -3'
miRNA:   3'- ccAACCGaGUUCGGCCaGAUCUGAac -5'
28327 3' -51.9 NC_005905.1 + 21869 0.77 0.387287
Target:  5'- -cUUGGCcCAAGCCGGcCUAGACUc- -3'
miRNA:   3'- ccAACCGaGUUCGGCCaGAUCUGAac -5'
28327 3' -51.9 NC_005905.1 + 19520 0.85 0.142119
Target:  5'- -cUUGGCcCAAGCCGGUCUGGACUc- -3'
miRNA:   3'- ccAACCGaGUUCGGCCAGAUCUGAac -5'
28327 3' -51.9 NC_005905.1 + 49341 0.91 0.057379
Target:  5'- cGGUcGGCUCAAGCCGGUCcAGAUUUGa -3'
miRNA:   3'- -CCAaCCGAGUUCGGCCAGaUCUGAAC- -5'
28327 3' -51.9 NC_005905.1 + 49296 1 0.015346
Target:  5'- cGGUcGGCUCAAGCCGGUCUAGAUUUGa -3'
miRNA:   3'- -CCAaCCGAGUUCGGCCAGAUCUGAAC- -5'
28327 3' -51.9 NC_005905.1 + 49026 1.12 0.002295
Target:  5'- cGGUUGGCUCAAGCCGGUCUAGACUUGa -3'
miRNA:   3'- -CCAACCGAGUUCGGCCAGAUCUGAAC- -5'
28327 3' -51.9 NC_005905.1 + 49116 1.12 0.002295
Target:  5'- cGGUUGGCUCAAGCCGGUCUAGACUUGa -3'
miRNA:   3'- -CCAACCGAGUUCGGCCAGAUCUGAAC- -5'
28327 3' -51.9 NC_005905.1 + 49161 1.12 0.002295
Target:  5'- cGGUUGGCUCAAGCCGGUCUAGACUUGa -3'
miRNA:   3'- -CCAACCGAGUUCGGCCAGAUCUGAAC- -5'
28327 3' -51.9 NC_005905.1 + 49251 1.04 0.007764
Target:  5'- cGGUcGGCUCAAGCCGGUCUAGACUUGa -3'
miRNA:   3'- -CCAaCCGAGUUCGGCCAGAUCUGAAC- -5'
28327 3' -51.9 NC_005905.1 + 49385 1.04 0.007764
Target:  5'- cGGUaGGCUCAAGCCGGUCUAGACUUGa -3'
miRNA:   3'- -CCAaCCGAGUUCGGCCAGAUCUGAAC- -5'
28327 3' -51.9 NC_005905.1 + 48936 1 0.015346
Target:  5'- cGGUcGGCUCAAGCCGGUCUAGAUUUGa -3'
miRNA:   3'- -CCAaCCGAGUUCGGCCAGAUCUGAAC- -5'
28327 3' -51.9 NC_005905.1 + 49071 1 0.015346
Target:  5'- cGGUcGGCUCAAGCCGGUCUAGAUUUGa -3'
miRNA:   3'- -CCAaCCGAGUUCGGCCAGAUCUGAAC- -5'
28327 3' -51.9 NC_005905.1 + 49206 1 0.015346
Target:  5'- cGGUcGGCUCAAGCCGGUCUAGAUUUGa -3'
miRNA:   3'- -CCAaCCGAGUUCGGCCAGAUCUGAAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.