Results 1 - 20 of 58 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28327 | 3' | -51.9 | NC_005905.1 | + | 16943 | 0.67 | 0.913473 |
Target: 5'- -aUUGGCUgAAGCUGGUUUuuauuacacAGGCUUu -3' miRNA: 3'- ccAACCGAgUUCGGCCAGA---------UCUGAAc -5' |
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28327 | 3' | -51.9 | NC_005905.1 | + | 11596 | 0.85 | 0.142119 |
Target: 5'- -cUUGGCcCAAGCCGGUCUGGACUc- -3' miRNA: 3'- ccAACCGaGUUCGGCCAGAUCUGAac -5' |
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28327 | 3' | -51.9 | NC_005905.1 | + | 11725 | 0.85 | 0.142119 |
Target: 5'- -cUUGGCcCAAGCCGGUCUGGACUc- -3' miRNA: 3'- ccAACCGaGUUCGGCCAGAUCUGAac -5' |
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28327 | 3' | -51.9 | NC_005905.1 | + | 9053 | 0.86 | 0.117007 |
Target: 5'- -cUUGGCUCAAGCCGGcCUGGACUc- -3' miRNA: 3'- ccAACCGAGUUCGGCCaGAUCUGAac -5' |
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28327 | 3' | -51.9 | NC_005905.1 | + | 17530 | 0.68 | 0.862849 |
Target: 5'- aGGUUGGCUUggGCCaagCUAG-CUUc -3' miRNA: 3'- -CCAACCGAGuuCGGccaGAUCuGAAc -5' |
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28327 | 3' | -51.9 | NC_005905.1 | + | 8789 | 0.75 | 0.493282 |
Target: 5'- -cUUGGCcCAAGCCGGgCUGGACUc- -3' miRNA: 3'- ccAACCGaGUUCGGCCaGAUCUGAac -5' |
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28327 | 3' | -51.9 | NC_005905.1 | + | 8898 | 0.77 | 0.414713 |
Target: 5'- -cUUGGCcCAAGCCGGcCUGGACUc- -3' miRNA: 3'- ccAACCGaGUUCGGCCaGAUCUGAac -5' |
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28327 | 3' | -51.9 | NC_005905.1 | + | 8943 | 0.77 | 0.414713 |
Target: 5'- -cUUGGCcCAAGCCGGcCUGGACUc- -3' miRNA: 3'- ccAACCGaGUUCGGCCaGAUCUGAac -5' |
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28327 | 3' | -51.9 | NC_005905.1 | + | 11206 | 0.85 | 0.142119 |
Target: 5'- -cUUGGCcCAAGCCGGUCUGGACUc- -3' miRNA: 3'- ccAACCGaGUUCGGCCAGAUCUGAac -5' |
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28327 | 3' | -51.9 | NC_005905.1 | + | 11531 | 0.85 | 0.142119 |
Target: 5'- -cUUGGCcCAAGCCGGUCUGGACUc- -3' miRNA: 3'- ccAACCGaGUUCGGCCAGAUCUGAac -5' |
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28327 | 3' | -51.9 | NC_005905.1 | + | 11336 | 0.85 | 0.142119 |
Target: 5'- -cUUGGCcCAAGCCGGUCUGGACUc- -3' miRNA: 3'- ccAACCGaGUUCGGCCAGAUCUGAac -5' |
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28327 | 3' | -51.9 | NC_005905.1 | + | 8834 | 0.8 | 0.282923 |
Target: 5'- -cUUGGCcCAAGCCGGUUUGGACUc- -3' miRNA: 3'- ccAACCGaGUUCGGCCAGAUCUGAac -5' |
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28327 | 3' | -51.9 | NC_005905.1 | + | 17200 | 0.68 | 0.862849 |
Target: 5'- aGGUUGGCUUggGCCaagCUAG-CUUc -3' miRNA: 3'- -CCAACCGAGuuCGGccaGAUCuGAAc -5' |
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28327 | 3' | -51.9 | NC_005905.1 | + | 11401 | 0.85 | 0.142119 |
Target: 5'- -cUUGGCcCAAGCCGGUCUGGACUc- -3' miRNA: 3'- ccAACCGaGUUCGGCCAGAUCUGAac -5' |
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28327 | 3' | -51.9 | NC_005905.1 | + | 17310 | 0.68 | 0.862849 |
Target: 5'- aGGUUGGCUUggGCCaagCUAG-CUUc -3' miRNA: 3'- -CCAACCGAGuuCGGccaGAUCuGAAc -5' |
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28327 | 3' | -51.9 | NC_005905.1 | + | 9118 | 0.77 | 0.414713 |
Target: 5'- -cUUGGCcCAAGCCGGcCUGGACUc- -3' miRNA: 3'- ccAACCGaGUUCGGCCaGAUCUGAac -5' |
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28327 | 3' | -51.9 | NC_005905.1 | + | 11466 | 0.85 | 0.142119 |
Target: 5'- -cUUGGCcCAAGCCGGUCUGGACUc- -3' miRNA: 3'- ccAACCGaGUUCGGCCAGAUCUGAac -5' |
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28327 | 3' | -51.9 | NC_005905.1 | + | 11660 | 0.85 | 0.142119 |
Target: 5'- -cUUGGCcCAAGCCGGUCUGGACUc- -3' miRNA: 3'- ccAACCGaGUUCGGCCAGAUCUGAac -5' |
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28327 | 3' | -51.9 | NC_005905.1 | + | 17420 | 0.68 | 0.862849 |
Target: 5'- aGGUUGGCUUggGCCaagCUAG-CUUc -3' miRNA: 3'- -CCAACCGAGuuCGGccaGAUCuGAAc -5' |
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28327 | 3' | -51.9 | NC_005905.1 | + | 8724 | 0.76 | 0.472962 |
Target: 5'- -cUUGGCcCAAGCCGGcCUGGACa-- -3' miRNA: 3'- ccAACCGaGUUCGGCCaGAUCUGaac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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