Results 1 - 20 of 58 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28328 | 3' | -51.9 | NC_005905.1 | + | 17602 | 0.77 | 0.414713 |
Target: 5'- -cUUGGCcCAAGCCGGcCUGGACUc- -3' miRNA: 3'- ccAACCGaGUUCGGCCaGAUCUGAac -5' |
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28328 | 3' | -51.9 | NC_005905.1 | + | 19740 | 0.85 | 0.142119 |
Target: 5'- -cUUGGCcCAAGCCGGUCUGGACUc- -3' miRNA: 3'- ccAACCGaGUUCGGCCAGAUCUGAac -5' |
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28328 | 3' | -51.9 | NC_005905.1 | + | 19915 | 0.85 | 0.142119 |
Target: 5'- -cUUGGCcCAAGCCGGUCUGGACUc- -3' miRNA: 3'- ccAACCGaGUUCGGCCAGAUCUGAac -5' |
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28328 | 3' | -51.9 | NC_005905.1 | + | 20084 | 0.85 | 0.142119 |
Target: 5'- -cUUGGCcCAAGCCGGUCUGGACUc- -3' miRNA: 3'- ccAACCGaGUUCGGCCAGAUCUGAac -5' |
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28328 | 3' | -51.9 | NC_005905.1 | + | 21734 | 0.82 | 0.207542 |
Target: 5'- -cUUGGUUCAAGCCGGcCUAGACUc- -3' miRNA: 3'- ccAACCGAGUUCGGCCaGAUCUGAac -5' |
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28328 | 3' | -51.9 | NC_005905.1 | + | 17034 | 0.82 | 0.224588 |
Target: 5'- ---cGGCUCAAGCCGGgCUGGACUc- -3' miRNA: 3'- ccaaCCGAGUUCGGCCaGAUCUGAac -5' |
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28328 | 3' | -51.9 | NC_005905.1 | + | 21779 | 0.77 | 0.387287 |
Target: 5'- -cUUGGCcCAAGCCGGcCUAGACUc- -3' miRNA: 3'- ccAACCGaGUUCGGCCaGAUCUGAac -5' |
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28328 | 3' | -51.9 | NC_005905.1 | + | 21824 | 0.77 | 0.387287 |
Target: 5'- -cUUGGCcCAAGCCGGcCUAGACUc- -3' miRNA: 3'- ccAACCGaGUUCGGCCaGAUCUGAac -5' |
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28328 | 3' | -51.9 | NC_005905.1 | + | 21869 | 0.77 | 0.387287 |
Target: 5'- -cUUGGCcCAAGCCGGcCUAGACUc- -3' miRNA: 3'- ccAACCGaGUUCGGCCaGAUCUGAac -5' |
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28328 | 3' | -51.9 | NC_005905.1 | + | 19520 | 0.85 | 0.142119 |
Target: 5'- -cUUGGCcCAAGCCGGUCUGGACUc- -3' miRNA: 3'- ccAACCGaGUUCGGCCAGAUCUGAac -5' |
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28328 | 3' | -51.9 | NC_005905.1 | + | 49341 | 0.91 | 0.057379 |
Target: 5'- cGGUcGGCUCAAGCCGGUCcAGAUUUGa -3' miRNA: 3'- -CCAaCCGAGUUCGGCCAGaUCUGAAC- -5' |
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28328 | 3' | -51.9 | NC_005905.1 | + | 49296 | 1 | 0.015346 |
Target: 5'- cGGUcGGCUCAAGCCGGUCUAGAUUUGa -3' miRNA: 3'- -CCAaCCGAGUUCGGCCAGAUCUGAAC- -5' |
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28328 | 3' | -51.9 | NC_005905.1 | + | 49026 | 1.12 | 0.002295 |
Target: 5'- cGGUUGGCUCAAGCCGGUCUAGACUUGa -3' miRNA: 3'- -CCAACCGAGUUCGGCCAGAUCUGAAC- -5' |
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28328 | 3' | -51.9 | NC_005905.1 | + | 49116 | 1.12 | 0.002295 |
Target: 5'- cGGUUGGCUCAAGCCGGUCUAGACUUGa -3' miRNA: 3'- -CCAACCGAGUUCGGCCAGAUCUGAAC- -5' |
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28328 | 3' | -51.9 | NC_005905.1 | + | 49161 | 1.12 | 0.002295 |
Target: 5'- cGGUUGGCUCAAGCCGGUCUAGACUUGa -3' miRNA: 3'- -CCAACCGAGUUCGGCCAGAUCUGAAC- -5' |
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28328 | 3' | -51.9 | NC_005905.1 | + | 49251 | 1.04 | 0.007764 |
Target: 5'- cGGUcGGCUCAAGCCGGUCUAGACUUGa -3' miRNA: 3'- -CCAaCCGAGUUCGGCCAGAUCUGAAC- -5' |
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28328 | 3' | -51.9 | NC_005905.1 | + | 49385 | 1.04 | 0.007764 |
Target: 5'- cGGUaGGCUCAAGCCGGUCUAGACUUGa -3' miRNA: 3'- -CCAaCCGAGUUCGGCCAGAUCUGAAC- -5' |
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28328 | 3' | -51.9 | NC_005905.1 | + | 48936 | 1 | 0.015346 |
Target: 5'- cGGUcGGCUCAAGCCGGUCUAGAUUUGa -3' miRNA: 3'- -CCAaCCGAGUUCGGCCAGAUCUGAAC- -5' |
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28328 | 3' | -51.9 | NC_005905.1 | + | 49071 | 1 | 0.015346 |
Target: 5'- cGGUcGGCUCAAGCCGGUCUAGAUUUGa -3' miRNA: 3'- -CCAaCCGAGUUCGGCCAGAUCUGAAC- -5' |
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28328 | 3' | -51.9 | NC_005905.1 | + | 49206 | 1 | 0.015346 |
Target: 5'- cGGUcGGCUCAAGCCGGUCUAGAUUUGa -3' miRNA: 3'- -CCAaCCGAGUUCGGCCAGAUCUGAAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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