miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28328 3' -51.9 NC_005905.1 + 8724 0.76 0.472962
Target:  5'- -cUUGGCcCAAGCCGGcCUGGACa-- -3'
miRNA:   3'- ccAACCGaGUUCGGCCaGAUCUGaac -5'
28328 3' -51.9 NC_005905.1 + 8789 0.75 0.493282
Target:  5'- -cUUGGCcCAAGCCGGgCUGGACUc- -3'
miRNA:   3'- ccAACCGaGUUCGGCCaGAUCUGAac -5'
28328 3' -51.9 NC_005905.1 + 8834 0.8 0.282923
Target:  5'- -cUUGGCcCAAGCCGGUUUGGACUc- -3'
miRNA:   3'- ccAACCGaGUUCGGCCAGAUCUGAac -5'
28328 3' -51.9 NC_005905.1 + 8898 0.77 0.414713
Target:  5'- -cUUGGCcCAAGCCGGcCUGGACUc- -3'
miRNA:   3'- ccAACCGaGUUCGGCCaGAUCUGAac -5'
28328 3' -51.9 NC_005905.1 + 8943 0.77 0.414713
Target:  5'- -cUUGGCcCAAGCCGGcCUGGACUc- -3'
miRNA:   3'- ccAACCGaGUUCGGCCaGAUCUGAac -5'
28328 3' -51.9 NC_005905.1 + 9053 0.86 0.117007
Target:  5'- -cUUGGCUCAAGCCGGcCUGGACUc- -3'
miRNA:   3'- ccAACCGAGUUCGGCCaGAUCUGAac -5'
28328 3' -51.9 NC_005905.1 + 9118 0.77 0.414713
Target:  5'- -cUUGGCcCAAGCCGGcCUGGACUc- -3'
miRNA:   3'- ccAACCGaGUUCGGCCaGAUCUGAac -5'
28328 3' -51.9 NC_005905.1 + 11206 0.85 0.142119
Target:  5'- -cUUGGCcCAAGCCGGUCUGGACUc- -3'
miRNA:   3'- ccAACCGaGUUCGGCCAGAUCUGAac -5'
28328 3' -51.9 NC_005905.1 + 11271 0.85 0.142119
Target:  5'- -cUUGGCcCAAGCCGGUCUGGACUc- -3'
miRNA:   3'- ccAACCGaGUUCGGCCAGAUCUGAac -5'
28328 3' -51.9 NC_005905.1 + 11336 0.85 0.142119
Target:  5'- -cUUGGCcCAAGCCGGUCUGGACUc- -3'
miRNA:   3'- ccAACCGaGUUCGGCCAGAUCUGAac -5'
28328 3' -51.9 NC_005905.1 + 11401 0.85 0.142119
Target:  5'- -cUUGGCcCAAGCCGGUCUGGACUc- -3'
miRNA:   3'- ccAACCGaGUUCGGCCAGAUCUGAac -5'
28328 3' -51.9 NC_005905.1 + 11466 0.85 0.142119
Target:  5'- -cUUGGCcCAAGCCGGUCUGGACUc- -3'
miRNA:   3'- ccAACCGaGUUCGGCCAGAUCUGAac -5'
28328 3' -51.9 NC_005905.1 + 11531 0.85 0.142119
Target:  5'- -cUUGGCcCAAGCCGGUCUGGACUc- -3'
miRNA:   3'- ccAACCGaGUUCGGCCAGAUCUGAac -5'
28328 3' -51.9 NC_005905.1 + 11596 0.85 0.142119
Target:  5'- -cUUGGCcCAAGCCGGUCUGGACUc- -3'
miRNA:   3'- ccAACCGaGUUCGGCCAGAUCUGAac -5'
28328 3' -51.9 NC_005905.1 + 11660 0.85 0.142119
Target:  5'- -cUUGGCcCAAGCCGGUCUGGACUc- -3'
miRNA:   3'- ccAACCGaGUUCGGCCAGAUCUGAac -5'
28328 3' -51.9 NC_005905.1 + 11725 0.85 0.142119
Target:  5'- -cUUGGCcCAAGCCGGUCUGGACUc- -3'
miRNA:   3'- ccAACCGaGUUCGGCCAGAUCUGAac -5'
28328 3' -51.9 NC_005905.1 + 11790 0.85 0.142119
Target:  5'- -cUUGGCcCAAGCCGGUCUGGACUc- -3'
miRNA:   3'- ccAACCGaGUUCGGCCAGAUCUGAac -5'
28328 3' -51.9 NC_005905.1 + 11855 0.85 0.142119
Target:  5'- -cUUGGCcCAAGCCGGUCUGGACUc- -3'
miRNA:   3'- ccAACCGaGUUCGGCCAGAUCUGAac -5'
28328 3' -51.9 NC_005905.1 + 11920 0.85 0.142119
Target:  5'- -cUUGGCcCAAGCCGGUCUGGACUc- -3'
miRNA:   3'- ccAACCGaGUUCGGCCAGAUCUGAac -5'
28328 3' -51.9 NC_005905.1 + 16943 0.67 0.913473
Target:  5'- -aUUGGCUgAAGCUGGUUUuuauuacacAGGCUUu -3'
miRNA:   3'- ccAACCGAgUUCGGCCAGA---------UCUGAAc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.