miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28328 5' -57.4 NC_005905.1 + 8736 0.66 0.708344
Target:  5'- uGUCGAaGCUaGcUUGGCcCAAGCCGGc -3'
miRNA:   3'- -UAGCUcCGAgCcAACCGaGUUCGGCC- -5'
28328 5' -57.4 NC_005905.1 + 8801 0.68 0.613851
Target:  5'- uGUCGAaGCUaGcUUGGCcCAAGCCGGg -3'
miRNA:   3'- -UAGCUcCGAgCcAACCGaGUUCGGCC- -5'
28328 5' -57.4 NC_005905.1 + 8846 0.66 0.687578
Target:  5'- uGUCGAaGCUaGcUUGGCcCAAGCCGGu -3'
miRNA:   3'- -UAGCUcCGAgCcAACCGaGUUCGGCC- -5'
28328 5' -57.4 NC_005905.1 + 8910 0.66 0.708344
Target:  5'- uGUCGAaGCUaGcUUGGCcCAAGCCGGc -3'
miRNA:   3'- -UAGCUcCGAgCcAACCGaGUUCGGCC- -5'
28328 5' -57.4 NC_005905.1 + 8955 0.66 0.708344
Target:  5'- uGUCGAaGCUaGcUUGGCcCAAGCCGGc -3'
miRNA:   3'- -UAGCUcCGAgCcAACCGaGUUCGGCC- -5'
28328 5' -57.4 NC_005905.1 + 9065 0.75 0.260417
Target:  5'- uGUCGAaGCUaGcUUGGCUCAAGCCGGc -3'
miRNA:   3'- -UAGCUcCGAgCcAACCGAGUUCGGCC- -5'
28328 5' -57.4 NC_005905.1 + 9130 0.66 0.708344
Target:  5'- uGUCGAaGCUaGcUUGGCcCAAGCCGGc -3'
miRNA:   3'- -UAGCUcCGAgCcAACCGaGUUCGGCC- -5'
28328 5' -57.4 NC_005905.1 + 11218 0.66 0.718628
Target:  5'- uAUCGAaGCUaGcUUGGCcCAAGCCGGu -3'
miRNA:   3'- -UAGCUcCGAgCcAACCGaGUUCGGCC- -5'
28328 5' -57.4 NC_005905.1 + 11283 0.66 0.718628
Target:  5'- uAUCGAaGCUaGcUUGGCcCAAGCCGGu -3'
miRNA:   3'- -UAGCUcCGAgCcAACCGaGUUCGGCC- -5'
28328 5' -57.4 NC_005905.1 + 11348 0.66 0.718628
Target:  5'- uAUCGAaGCUaGcUUGGCcCAAGCCGGu -3'
miRNA:   3'- -UAGCUcCGAgCcAACCGaGUUCGGCC- -5'
28328 5' -57.4 NC_005905.1 + 11413 0.66 0.718628
Target:  5'- uAUCGAaGCUaGcUUGGCcCAAGCCGGu -3'
miRNA:   3'- -UAGCUcCGAgCcAACCGaGUUCGGCC- -5'
28328 5' -57.4 NC_005905.1 + 11478 0.66 0.718628
Target:  5'- uAUCGAaGCUaGcUUGGCcCAAGCCGGu -3'
miRNA:   3'- -UAGCUcCGAgCcAACCGaGUUCGGCC- -5'
28328 5' -57.4 NC_005905.1 + 11543 0.66 0.718628
Target:  5'- uAUCGAaGCUaGcUUGGCcCAAGCCGGu -3'
miRNA:   3'- -UAGCUcCGAgCcAACCGaGUUCGGCC- -5'
28328 5' -57.4 NC_005905.1 + 11608 0.66 0.718628
Target:  5'- uAUCGAaGCUaGcUUGGCcCAAGCCGGu -3'
miRNA:   3'- -UAGCUcCGAgCcAACCGaGUUCGGCC- -5'
28328 5' -57.4 NC_005905.1 + 11672 0.66 0.718628
Target:  5'- uAUCGAaGCUaGcUUGGCcCAAGCCGGu -3'
miRNA:   3'- -UAGCUcCGAgCcAACCGaGUUCGGCC- -5'
28328 5' -57.4 NC_005905.1 + 11737 0.66 0.718628
Target:  5'- uAUCGAaGCUaGcUUGGCcCAAGCCGGu -3'
miRNA:   3'- -UAGCUcCGAgCcAACCGaGUUCGGCC- -5'
28328 5' -57.4 NC_005905.1 + 11802 0.66 0.718628
Target:  5'- uAUCGAaGCUaGcUUGGCcCAAGCCGGu -3'
miRNA:   3'- -UAGCUcCGAgCcAACCGaGUUCGGCC- -5'
28328 5' -57.4 NC_005905.1 + 11867 0.66 0.718628
Target:  5'- uAUCGAaGCUaGcUUGGCcCAAGCCGGu -3'
miRNA:   3'- -UAGCUcCGAgCcAACCGaGUUCGGCC- -5'
28328 5' -57.4 NC_005905.1 + 11932 0.66 0.718628
Target:  5'- uAUCGAaGCUaGcUUGGCcCAAGCCGGu -3'
miRNA:   3'- -UAGCUcCGAgCcAACCGaGUUCGGCC- -5'
28328 5' -57.4 NC_005905.1 + 17210 0.68 0.571845
Target:  5'- gAUCGAGaccaGGUUGGCUUggGCCa- -3'
miRNA:   3'- -UAGCUCcgagCCAACCGAGuuCGGcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.