miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28328 5' -57.4 NC_005905.1 + 19463 0.66 0.708344
Target:  5'- uGUCGAaGCUaGcUUGGCcCAAGCCGGc -3'
miRNA:   3'- -UAGCUcCGAgCcAACCGaGUUCGGCC- -5'
28328 5' -57.4 NC_005905.1 + 21947 0.74 0.27349
Target:  5'- uGUCGAaGCUac-UUGGCUCAAGCCGGc -3'
miRNA:   3'- -UAGCUcCGAgccAACCGAGUUCGGCC- -5'
28328 5' -57.4 NC_005905.1 + 21722 0.7 0.461247
Target:  5'- uGUCGAaGCUaacUUGGUUCAAGCCGGc -3'
miRNA:   3'- -UAGCUcCGAgccAACCGAGUUCGGCC- -5'
28328 5' -57.4 NC_005905.1 + 49377 0.69 0.51032
Target:  5'- -cCGAaaCcCGGUaGGCUCAAGCCGGu -3'
miRNA:   3'- uaGCUccGaGCCAaCCGAGUUCGGCC- -5'
28328 5' -57.4 NC_005905.1 + 19508 0.66 0.687578
Target:  5'- uGUCGAaGCUaGcUUGGCcCAAGCCGGu -3'
miRNA:   3'- -UAGCUcCGAgCcAACCGaGUUCGGCC- -5'
28328 5' -57.4 NC_005905.1 + 19903 0.66 0.687578
Target:  5'- uGUCGAaGCUaGcUUGGCcCAAGCCGGu -3'
miRNA:   3'- -UAGCUcCGAgCcAACCGaGUUCGGCC- -5'
28328 5' -57.4 NC_005905.1 + 19728 0.66 0.69799
Target:  5'- uGUCGAaGCUaacUUGGCcCAAGCCGGu -3'
miRNA:   3'- -UAGCUcCGAgccAACCGaGUUCGGCC- -5'
28328 5' -57.4 NC_005905.1 + 17590 0.66 0.708344
Target:  5'- uGUCGAaGCUaGcUUGGCcCAAGCCGGc -3'
miRNA:   3'- -UAGCUcCGAgCcAACCGaGUUCGGCC- -5'
28328 5' -57.4 NC_005905.1 + 17700 0.66 0.708344
Target:  5'- uGUCGAaGCUaGcUUGGCcCAAGCCGGc -3'
miRNA:   3'- -UAGCUcCGAgCcAACCGaGUUCGGCC- -5'
28328 5' -57.4 NC_005905.1 + 19663 0.77 0.173482
Target:  5'- uGUCGAGGCUaGcUUGGCcCAAGCCGGc -3'
miRNA:   3'- -UAGCUCCGAgCcAACCGaGUUCGGCC- -5'
28328 5' -57.4 NC_005905.1 + 20072 0.78 0.164645
Target:  5'- uGUCGAGGCUaGcUUGGCcCAAGCCGGu -3'
miRNA:   3'- -UAGCUCCGAgCcAACCGaGUUCGGCC- -5'
28328 5' -57.4 NC_005905.1 + 48928 0.85 0.052426
Target:  5'- -cCGAaGCUCGGUcGGCUCAAGCCGGu -3'
miRNA:   3'- uaGCUcCGAGCCAaCCGAGUUCGGCC- -5'
28328 5' -57.4 NC_005905.1 + 49016 1.08 0.001324
Target:  5'- uAUCGAGGCUCGGUUGGCUCAAGCCGGu -3'
miRNA:   3'- -UAGCUCCGAGCCAACCGAGUUCGGCC- -5'
28328 5' -57.4 NC_005905.1 + 49106 1.08 0.001324
Target:  5'- uAUCGAGGCUCGGUUGGCUCAAGCCGGu -3'
miRNA:   3'- -UAGCUCCGAGCCAACCGAGUUCGGCC- -5'
28328 5' -57.4 NC_005905.1 + 49151 1.08 0.001324
Target:  5'- uAUCGAGGCUCGGUUGGCUCAAGCCGGu -3'
miRNA:   3'- -UAGCUCCGAGCCAACCGAGUUCGGCC- -5'
28328 5' -57.4 NC_005905.1 + 49061 1 0.004292
Target:  5'- uAUCGAGGCUCGGUcGGCUCAAGCCGGu -3'
miRNA:   3'- -UAGCUCCGAGCCAaCCGAGUUCGGCC- -5'
28328 5' -57.4 NC_005905.1 + 49196 1 0.004292
Target:  5'- uAUCGAGGCUCGGUcGGCUCAAGCCGGu -3'
miRNA:   3'- -UAGCUCCGAGCCAaCCGAGUUCGGCC- -5'
28328 5' -57.4 NC_005905.1 + 49286 1 0.004292
Target:  5'- uAUCGAGGCUCGGUcGGCUCAAGCCGGu -3'
miRNA:   3'- -UAGCUCCGAGCCAaCCGAGUUCGGCC- -5'
28328 5' -57.4 NC_005905.1 + 49331 1 0.004292
Target:  5'- uAUCGAGGCUCGGUcGGCUCAAGCCGGu -3'
miRNA:   3'- -UAGCUCCGAGCCAaCCGAGUUCGGCC- -5'
28328 5' -57.4 NC_005905.1 + 49241 0.97 0.007831
Target:  5'- uAUUGAGGCUCGGUcGGCUCAAGCCGGu -3'
miRNA:   3'- -UAGCUCCGAGCCAaCCGAGUUCGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.