miRNA display CGI


Results 21 - 40 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28328 5' -57.4 NC_005905.1 + 49196 1 0.004292
Target:  5'- uAUCGAGGCUCGGUcGGCUCAAGCCGGu -3'
miRNA:   3'- -UAGCUCCGAGCCAaCCGAGUUCGGCC- -5'
28328 5' -57.4 NC_005905.1 + 49286 1 0.004292
Target:  5'- uAUCGAGGCUCGGUcGGCUCAAGCCGGu -3'
miRNA:   3'- -UAGCUCCGAGCCAaCCGAGUUCGGCC- -5'
28328 5' -57.4 NC_005905.1 + 49331 1 0.004292
Target:  5'- uAUCGAGGCUCGGUcGGCUCAAGCCGGu -3'
miRNA:   3'- -UAGCUCCGAGCCAaCCGAGUUCGGCC- -5'
28328 5' -57.4 NC_005905.1 + 49241 0.97 0.007831
Target:  5'- uAUUGAGGCUCGGUcGGCUCAAGCCGGu -3'
miRNA:   3'- -UAGCUCCGAGCCAaCCGAGUUCGGCC- -5'
28328 5' -57.4 NC_005905.1 + 48928 0.85 0.052426
Target:  5'- -cCGAaGCUCGGUcGGCUCAAGCCGGu -3'
miRNA:   3'- uaGCUcCGAGCCAaCCGAGUUCGGCC- -5'
28328 5' -57.4 NC_005905.1 + 20072 0.78 0.164645
Target:  5'- uGUCGAGGCUaGcUUGGCcCAAGCCGGu -3'
miRNA:   3'- -UAGCUCCGAgCcAACCGaGUUCGGCC- -5'
28328 5' -57.4 NC_005905.1 + 19663 0.77 0.173482
Target:  5'- uGUCGAGGCUaGcUUGGCcCAAGCCGGc -3'
miRNA:   3'- -UAGCUCCGAgCcAACCGaGUUCGGCC- -5'
28328 5' -57.4 NC_005905.1 + 21947 0.74 0.27349
Target:  5'- uGUCGAaGCUac-UUGGCUCAAGCCGGc -3'
miRNA:   3'- -UAGCUcCGAgccAACCGAGUUCGGCC- -5'
28328 5' -57.4 NC_005905.1 + 11672 0.66 0.718628
Target:  5'- uAUCGAaGCUaGcUUGGCcCAAGCCGGu -3'
miRNA:   3'- -UAGCUcCGAgCcAACCGaGUUCGGCC- -5'
28328 5' -57.4 NC_005905.1 + 11737 0.66 0.718628
Target:  5'- uAUCGAaGCUaGcUUGGCcCAAGCCGGu -3'
miRNA:   3'- -UAGCUcCGAgCcAACCGaGUUCGGCC- -5'
28328 5' -57.4 NC_005905.1 + 11802 0.66 0.718628
Target:  5'- uAUCGAaGCUaGcUUGGCcCAAGCCGGu -3'
miRNA:   3'- -UAGCUcCGAgCcAACCGaGUUCGGCC- -5'
28328 5' -57.4 NC_005905.1 + 11867 0.66 0.718628
Target:  5'- uAUCGAaGCUaGcUUGGCcCAAGCCGGu -3'
miRNA:   3'- -UAGCUcCGAgCcAACCGaGUUCGGCC- -5'
28328 5' -57.4 NC_005905.1 + 11932 0.66 0.718628
Target:  5'- uAUCGAaGCUaGcUUGGCcCAAGCCGGu -3'
miRNA:   3'- -UAGCUcCGAgCcAACCGaGUUCGGCC- -5'
28328 5' -57.4 NC_005905.1 + 11608 0.66 0.718628
Target:  5'- uAUCGAaGCUaGcUUGGCcCAAGCCGGu -3'
miRNA:   3'- -UAGCUcCGAgCcAACCGaGUUCGGCC- -5'
28328 5' -57.4 NC_005905.1 + 11543 0.66 0.718628
Target:  5'- uAUCGAaGCUaGcUUGGCcCAAGCCGGu -3'
miRNA:   3'- -UAGCUcCGAgCcAACCGaGUUCGGCC- -5'
28328 5' -57.4 NC_005905.1 + 11478 0.66 0.718628
Target:  5'- uAUCGAaGCUaGcUUGGCcCAAGCCGGu -3'
miRNA:   3'- -UAGCUcCGAgCcAACCGaGUUCGGCC- -5'
28328 5' -57.4 NC_005905.1 + 11413 0.66 0.718628
Target:  5'- uAUCGAaGCUaGcUUGGCcCAAGCCGGu -3'
miRNA:   3'- -UAGCUcCGAgCcAACCGaGUUCGGCC- -5'
28328 5' -57.4 NC_005905.1 + 11348 0.66 0.718628
Target:  5'- uAUCGAaGCUaGcUUGGCcCAAGCCGGu -3'
miRNA:   3'- -UAGCUcCGAgCcAACCGaGUUCGGCC- -5'
28328 5' -57.4 NC_005905.1 + 11283 0.66 0.718628
Target:  5'- uAUCGAaGCUaGcUUGGCcCAAGCCGGu -3'
miRNA:   3'- -UAGCUcCGAgCcAACCGaGUUCGGCC- -5'
28328 5' -57.4 NC_005905.1 + 9065 0.75 0.260417
Target:  5'- uGUCGAaGCUaGcUUGGCUCAAGCCGGc -3'
miRNA:   3'- -UAGCUcCGAgCcAACCGAGUUCGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.