miRNA display CGI


Results 21 - 40 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28328 5' -57.4 NC_005905.1 + 17700 0.66 0.708344
Target:  5'- uGUCGAaGCUaGcUUGGCcCAAGCCGGc -3'
miRNA:   3'- -UAGCUcCGAgCcAACCGaGUUCGGCC- -5'
28328 5' -57.4 NC_005905.1 + 8955 0.66 0.708344
Target:  5'- uGUCGAaGCUaGcUUGGCcCAAGCCGGc -3'
miRNA:   3'- -UAGCUcCGAgCcAACCGaGUUCGGCC- -5'
28328 5' -57.4 NC_005905.1 + 9130 0.66 0.708344
Target:  5'- uGUCGAaGCUaGcUUGGCcCAAGCCGGc -3'
miRNA:   3'- -UAGCUcCGAgCcAACCGaGUUCGGCC- -5'
28328 5' -57.4 NC_005905.1 + 8910 0.66 0.708344
Target:  5'- uGUCGAaGCUaGcUUGGCcCAAGCCGGc -3'
miRNA:   3'- -UAGCUcCGAgCcAACCGaGUUCGGCC- -5'
28328 5' -57.4 NC_005905.1 + 21767 0.66 0.708344
Target:  5'- cGUCGAaGCUaacUUGGCcCAAGCCGGc -3'
miRNA:   3'- -UAGCUcCGAgccAACCGaGUUCGGCC- -5'
28328 5' -57.4 NC_005905.1 + 17590 0.66 0.708344
Target:  5'- uGUCGAaGCUaGcUUGGCcCAAGCCGGc -3'
miRNA:   3'- -UAGCUcCGAgCcAACCGaGUUCGGCC- -5'
28328 5' -57.4 NC_005905.1 + 19728 0.66 0.69799
Target:  5'- uGUCGAaGCUaacUUGGCcCAAGCCGGu -3'
miRNA:   3'- -UAGCUcCGAgccAACCGaGUUCGGCC- -5'
28328 5' -57.4 NC_005905.1 + 19508 0.66 0.687578
Target:  5'- uGUCGAaGCUaGcUUGGCcCAAGCCGGu -3'
miRNA:   3'- -UAGCUcCGAgCcAACCGaGUUCGGCC- -5'
28328 5' -57.4 NC_005905.1 + 8846 0.66 0.687578
Target:  5'- uGUCGAaGCUaGcUUGGCcCAAGCCGGu -3'
miRNA:   3'- -UAGCUcCGAgCcAACCGaGUUCGGCC- -5'
28328 5' -57.4 NC_005905.1 + 19903 0.66 0.687578
Target:  5'- uGUCGAaGCUaGcUUGGCcCAAGCCGGu -3'
miRNA:   3'- -UAGCUcCGAgCcAACCGaGUUCGGCC- -5'
28328 5' -57.4 NC_005905.1 + 8801 0.68 0.613851
Target:  5'- uGUCGAaGCUaGcUUGGCcCAAGCCGGg -3'
miRNA:   3'- -UAGCUcCGAgCcAACCGaGUUCGGCC- -5'
28328 5' -57.4 NC_005905.1 + 17210 0.68 0.571845
Target:  5'- gAUCGAGaccaGGUUGGCUUggGCCa- -3'
miRNA:   3'- -UAGCUCcgagCCAACCGAGuuCGGcc -5'
28328 5' -57.4 NC_005905.1 + 17540 0.68 0.571845
Target:  5'- gAUCGAGaccaGGUUGGCUUggGCCa- -3'
miRNA:   3'- -UAGCUCcgagCCAACCGAGuuCGGcc -5'
28328 5' -57.4 NC_005905.1 + 17430 0.68 0.571845
Target:  5'- gAUCGAGaccaGGUUGGCUUggGCCa- -3'
miRNA:   3'- -UAGCUCcgagCCAACCGAGuuCGGcc -5'
28328 5' -57.4 NC_005905.1 + 17320 0.68 0.571845
Target:  5'- gAUCGAGaccaGGUUGGCUUggGCCa- -3'
miRNA:   3'- -UAGCUCcgagCCAACCGAGuuCGGcc -5'
28328 5' -57.4 NC_005905.1 + 49377 0.69 0.51032
Target:  5'- -cCGAaaCcCGGUaGGCUCAAGCCGGu -3'
miRNA:   3'- uaGCUccGaGCCAaCCGAGUUCGGCC- -5'
28328 5' -57.4 NC_005905.1 + 21722 0.7 0.461247
Target:  5'- uGUCGAaGCUaacUUGGUUCAAGCCGGc -3'
miRNA:   3'- -UAGCUcCGAgccAACCGAGUUCGGCC- -5'
28328 5' -57.4 NC_005905.1 + 21947 0.74 0.27349
Target:  5'- uGUCGAaGCUac-UUGGCUCAAGCCGGc -3'
miRNA:   3'- -UAGCUcCGAgccAACCGAGUUCGGCC- -5'
28328 5' -57.4 NC_005905.1 + 9065 0.75 0.260417
Target:  5'- uGUCGAaGCUaGcUUGGCUCAAGCCGGc -3'
miRNA:   3'- -UAGCUcCGAgCcAACCGAGUUCGGCC- -5'
28328 5' -57.4 NC_005905.1 + 19663 0.77 0.173482
Target:  5'- uGUCGAGGCUaGcUUGGCcCAAGCCGGc -3'
miRNA:   3'- -UAGCUCCGAgCcAACCGaGUUCGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.